Table 3. Selection signatures in ancestral populations.

		Estimated ancestral allele frequencies
OAR	position	AFR	ASI	SWA	NEU	CEU	ITA	SWE	P-value	Q-value	Cand. gene	Nr. genes	Rank
1	7192190	0.15	0.08	0.16	0.55	0.69	0.04	0.38	1.7e-06	5.3e-03	TRPM8	19	8
1	237070498	0.87	0.95	0.91	0.48	0.24	0.77	0.35	1.4e-05	2.5e-02	GYG1	16	5
1	239424807	0.46	0.68	0.06	0.21	0.15	0.11	0.17	3.4e-05	4.8e-02		9
1	239491620	0.53	0.41	0.94	0.86	0.93	0.93	0.88	4.3e-05	5.6e-02		9
2	45500785	0.43	0.91	0.23	0.76	0.87	0.87	0.93	2.2e-06	6.4e-03	LPL	6	3
2	182607165	0.99	0.97	0.18	0.64	0.73	0.83	0.64	3.4e-08	1.8e-04	INSIG2	10	3
2	182672296	0.99	0.94	0.32	0.90	0.86	0.89	0.81	7.7e-07	2.8e-03		10
2	192231314	0.59	0.93	0.36	0.96	0.89	0.81	0.95	1.6e-05	2.8e-02		8
3	132478420	0.24	0.89	0.18	0.93	0.81	0.84	0.82	1.2e-06	3.9e-03	HOXC	54	19
3	180860403	0.71	0.53	0.28	0.82	0.31	0.12	0.13	1.7e-05	2.8e-02		22
5	15522700	0.68	0.63	0.92	0.27	0.76	0.99	0.78	9.8e-06	2.0e-02		51
7	89519883	0.63	0.61	0.19	0.89	0.18	0.60	0.95	6.1e-10	5.2e-06	TSHR	6	3
8	31748642	0.84	0.93	0.94	0.16	0.63	0.47	0.19	2.8e-05	4.1e-02	PREP	6	1
11	18248852	0.35	0.32	0.82	0.64	0.94	0.96	0.92	1.3e-05	2.5e-02	NF1	23	1
11	18325488	0.87	0.93	0.00	0.35	0.04	0.03	0.04	3.3e-16	7.2e-12		24	4
11	18335747	0.87	0.93	0.00	0.35	0.04	0.03	0.04	3.3e-16	7.2e-12		22	4
11	18433474	0.87	0.93	0.02	0.35	0.07	0.02	0.05	3.8e-15	5.4e-11		22	1
11	18440783	0.78	0.93	0.02	0.34	0.07	0.02	0.05	2.0e-14	2.2e-10		22	1
11	25704651	0.97	0.96	0.97	0.42	0.94	0.94	0.96	8.5e-06	1.9e-02		73
11	26284826	0.99	0.97	0.94	0.38	0.93	0.95	0.79	3.2e-05	4.6e-02		100
11	26571629	0.92	0.94	0.98	0.29	0.89	0.88	0.86	1.8e-05	2.8e-02		115
11	26872280	0.78	0.71	0.93	0.15	0.89	0.90	0.90	2.2e-07	9.5e-04		111
13	12120674	0.29	0.84	0.97	0.91	0.97	0.92	0.84	7.7e-06	1.8e-02	GATA3	6	1
13	62857560	0.52	0.62	0.65	0.98	0.67	0.92	0.36	3.6e-06	9.7e-03	ASIP	32	12
15	3706790	0.71	0.22	0.96	0.28	0.27	0.34	0.21	6.8e-06	1.7e-02		4
15	29856310	0.98	0.99	0.99	0.47	0.92	0.95	0.96	9.8e-06	2.0e-02		35
16	38696505	0.95	0.98	0.95	0.99	0.68	0.31	0.30	6.8e-07	2.7e-03	PRLR	18	2
17	4867509	0.91	0.95	0.85	0.54	0.18	0.58	0.17	1.8e-05	2.8e-02	TMEM154	9	1
18	19342316	0.90	0.79	0.67	0.35	0.75	0.10	0.09	1.9e-07	9.3e-04	ACAN	31	4
18	66470371	0.99	0.97	0.90	0.90	0.18	0.04	0.08	1.9e-09	1.3e-05	TRAF3	28	5
20	17381047	0.24	0.61	0.97	0.98	0.93	0.99	0.91	3.1e-08	1.8e-04	VEGFA	48	1
25	7517270	0.95	0.94	0.93	0.14	0.27	0.57	0.19	1.8e-05	2.8e-02	wool QTL	13

SNP with significant FLK value at the 5% FDR level, with estimated allele frequencies in all ancestral groups. The number of genes included in each region (1Mb up-or-downstream the position) and the rank of candidate genes within the region is also provided. : signatures of selection previously identified [4].