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. Author manuscript; available in PMC: 2014 Sep 1.
Published in final edited form as: Cancer Discov. 2013 Dec 19;4(3):348–361. doi: 10.1158/2159-8290.CD-13-0349

Table 2.

Summary table of prognostic and genetic markers in serial CLL cases (time point 1)

No/low evolution of DNA
methylationn = 19 (%)
High evolution of DNA
methylationn = 9 (%)
P
Prognostic indicators
    IGHV unmutated 7 (37) 9 (100) 0.002
    ZAP70 low methylation 7 (37) 9 (100) 0.002
    High methylation heterogeneity 5 (26) 8 (89) 0.002

Cytogenetics
    Normal karyotype 4 (21) 2 (22) n.s.
    Del 13q14 12 (63) 6 (67) n.s.
    Del 11q23 4 (21) 1 (11) n.s.
    Del 17p13 3 (16) 1 (11) n.s.
    Del 6q 1 (5) 1 (11) n.s.
    Trisomy 12 3 (16) 1 (11) n.s.

Genetic mutations
    TP53 3 (16) 5 (56) 0.03
    SF3B1 4 (21) 3 (33) n.s.
    NOTCH 3 (16) 0 n.s.
    MYD88 3 (16) 0 n.s.
    BRAF 1 (5) 2 (22) n.s.
    KRAS 0 1 (11) n.s.

Mutation clone size
    Clonal (>80%) 7 (37) 1 (11) n.s.
    Subclonal (<80%) 5 (26) 6 (67) 0.04
    Any 11 (58) 7 (78) n.s.