Table 2. Competitive gene-set analysis of the genetic variation in the nine sub-processes of DNA-damage response and DNA repair in relation to human longevity.
Setup | ||||||
---|---|---|---|---|---|---|
I – χ2 | II – trend test | III – best-test model | ||||
Sub-processes | P-value | q-value | P-value | q-value | P-value | q-value |
DmgRes | 0.113 | 0.171 | 0.475 | 0.556 | 0.299 | 0.447 |
BER | 0.015 | 0.110 | 0.029 | 0.121 | 0.016 | 0.111 |
NER | 0.679 | 0.681 | 0.556 | 0.563 | 0.679 | 0.681 |
MMR | 0.434 | 0.553 | 0.498 | 0.556 | 0.686 | 0.681 |
HRR | 0.035 | 0.110 | 0.004 | 0.030 | 0.025 | 0.111 |
NHEJ | 0.099 | 0.171 | 0.163 | 0.286 | 0.112 | 0.231 |
RECQ | 0.032 | 0.110 | 0.048 | 0.159 | 0.049 | 0.160 |
TeloFunc | 0.076 | 0.159 | 0.077 | 0.163 | 0.130 | 0.231 |
MitoDNA | 0.616 | 0.681 | 0.439 | 0.556 | 0.608 | 0.681 |
Abbreviations: BER, base excision repair; DmgRes, DNA-damage response; HRR, homologous recombinational repair; MitoDNA, mitochondrial DNA processes; MMR, mismatch repair; NER, nucleotide excision repair; NHEJ, non-homologous end-joining; RECQ, RecQ helicase activities; TeloFunc, telomere functioning.
P- and q-values <0.05 are shown in bold.