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. 2014 Sep;34(18):3374–3387. doi: 10.1128/MCB.01701-13

TABLE 3.

Primers for measurement of TCRα secondary gene rearrangement by semiquantitative RT-PCR

Target Primer sequence
Forward (5′–3′) Reverse (5′–3′)
Vα3-Cα CCCAGTGGTTCAAGGAGTGA TTCAGCAGGAGGATTCGGAG
Vα6-Cα CTGACTCATGTCAGCCTGAGAG TTCAGCAGGAGGATTCGGAG
Vα8-Cα CAACAAGAGGACCGAGCACC TTCAGCAGGAGGATTCGGAG
Vα14-Cα TGGGAGATACTCAGCAACTCTGG TTCAGCAGGAGGATTCGGAG
Vα19-Cα CTGCTTCTGACAGAGCTCCAG TTCAGCAGGAGGATTCGGAG
Vα3-Jα2 CCCAGTGGTTCAAGGAGTGA ACCACTTAGTCCTCCAGTATTC
Vα3-Jα18 CCCAGTGGTTCAAGGAGTGA CAGGTATGACAATCAGCTGAGTCC
Vα3-Jα30 CCCAGTGGTTCAAGGAGTGA AGATGTGTCCCTTTTCCAAAGATG
Tcra constant region (Cα) TTCAAAGAGACCAACGCCAC TTCAGCAGGAGGATTCGGAG