TABLE 3.

Proposed improvements and specifications to the genome annotation of F. prausnitzii A2-165

NCBI Protein ID	Current annotation (NCBI)a	Proposed annotation
FAEPRAA2165_01205	Hypothetical protein	Pantothenate transporter gene panT
FAEPRAA2165_01298	Hypothetical protein	Riboflavin transporter gene ribU
FAEPRAA2165_01333	Putative proton-coupled thiamine transporter YuaJ	Thiamine transporter gene thiT
FAEPRAA2165_01388	4-Phosphoerythronate dehydrogenase	d-Lactate dehydrogenase
FAEPRAA2165_01654	TrpR family protein YerC/YecD	Histidine repressor HisR
FAEPRAA2165_01745	ABC transporter substrate binding protein	Tryptophan ABC transporter gene trpX
FAEPRAA2165_01747	Branched-chain amino acid ABC transporter, permease protein	Tryptophan ABC transporter gene trpY
FAEPRAA2165_01748	ABC transporter, ATP-binding protein	Tryptophan ABC transporter gene trpZ
FAEPRAA2165_01816	3H domain protein	Niacin-responsive regulator NiaR
FAEPRAA2165_01935	Dehydrogenase, FMN dependent	Hydroxyacid oxidase gene (similar to eukaryotic gene Hao2)
FAEPRAA2165_02602	Hypothetical protein	Niacin transporter gene niaY
FAEPRAA2165_02613	Transcriptional regulator, GntR family	Pyridoxine-responsive regulator PdxR
FAEPRAA2165_02615	Hypothetical protein	ECF-family pyridoxine transporter gene pxdT
FAEPRAA2165_02750	Transporter, major facilitator family protein	MFS-type arginine transporter
FAEPRAA2165_02761	Glycosyl hydrolase family 32	Beta-fructosidase (levanase/invertase) gene
FAEPRAA2165_02762	Tat pathway signal sequence domain protein	Fructooligosaccharide ABC transporter
FAEPRAA2165_02763	ABC transporter, permease protein	Fructooligosaccharide ABC transporter
FAEPRAA2165_02764	ABC transporter, permease protein	Fructooligosaccharide ABC transporter
FAEPRAA2165_02765	Transcriptional regulator, LacI family	Fructooligosaccharides utilization transcriptional regulator SusR, LacI family
FAEPRAA2165_02788	Cobalt transport protein	EcfT energizing component
FAEPRAA2165_02789	ABC transporter, ATP-binding protein	EcfA′ energizing component
FAEPRAA2165_02790	Cobalt ABC transporter, ATP-binding protein	EcfA energizing component
FAEPRAA2165_03014	Hypothetical protein	Folate transporter gene folT
FAEPRAA2165_03033	NlpA lipoprotein	Predicted methionine ABC transporter gene metQ
FAEPRAA2165_03034	ABC transporter, ATP-binding protein	Predicted methionine ABC transporter gene metP
FAEPRAA2165_03035	ABC transporter, permease protein	Predicted methionine ABC transporter gene metN
FAEPRAA2165_03085	ABC transporter, substrate-binding protein, family 3	Lysine ABC transporter gene lysX
FAEPRAA2165_03087	ABC transporter, permease protein	Lysine ABC transporter gene lysY
FAEPRAA2165_03088	ABC transporter, permease protein	Lysine ABC transporter gene lysZ
FAEPRAA2165_03374	ABC transporter, ATP-binding protein	Histidine ABC transporter gene hisZ
FAEPRAA2165_03375	ABC transporter, permease protein	Histidine ABC transporter gene hisY
FAEPRAA2165_03376	ABC transporter, substrate-binding protein, family 3	Histidine ABC transporter gene hisX

^aFMN, flavin mononucleotide.