TABLE 2.
Mean reliability scores in phylogenetic reconstructionsa
| No. of genes in concatemers | Reliability score, mean ± SD |
|||
|---|---|---|---|---|
| Maximum likelihood | Minimum evolution | Neighbor joining | Maximum parsimony | |
| 1 | 0.27 ± 0.09 | 0.31 ± 0.10 | 0.31 ± 0.10 | 0.22 ± 0.09 |
| 2 | 0.43 ± 0.01 | 0.40 ± 0.04 | 0.42 ± 0.01 | 0.41 ± 0.01 |
| 3 | 0.53 ± 0.02 | 0.54 ± 0.01 | 0.53 ± 0.02 | 0.44 ± 0.04 |
| 4 | 0.59 ± 0.02 | 0.60 ± 0.02 | 0.59 ± 0.02 | 0.47 ± 0.02 |
| 5 | 0.57 ± 0.01 | 0.57 ± 0.01 | 0.57 ± 0.01 | 0.51 ± 0.03 |
| 6 | 0.55 ± 0.01 | 0.56 ± 0.01 | 0.55 ± 0.01 | 0.47 ± 0.01 |
Each reliability score is the number of nodes with bootstrap values greater than or equal to 80 divided by the total number of nodes. Standard deviations represent 1 standard deviation from the mean. The genes used in the concatemers are as follows: 16S rRNA gene, ftsZ, gapA, gyrB, recA, or rpoA in 1-gene concatemers, recA and rpoA in 2-gene concatemers, recA, rpoA, and gapA in 3-gene concatemers, 16S rRNA gene, recA, rpoA, and gapA in 4-gene concatemers, 16S rRNA gene, recA, rpoA, gapA, and gyrB in 5-gene concatemers, and 16S rRNA gene, recA, rpoA, gapA, gyrB, and ftsZ in 6-gene concatemers.