Skip to main content
. 2014 Sep;80(17):5359–5365. doi: 10.1128/AEM.01206-14

TABLE 2.

Mean reliability scores in phylogenetic reconstructionsa

No. of genes in concatemers Reliability score, mean ± SD
Maximum likelihood Minimum evolution Neighbor joining Maximum parsimony
1 0.27 ± 0.09 0.31 ± 0.10 0.31 ± 0.10 0.22 ± 0.09
2 0.43 ± 0.01 0.40 ± 0.04 0.42 ± 0.01 0.41 ± 0.01
3 0.53 ± 0.02 0.54 ± 0.01 0.53 ± 0.02 0.44 ± 0.04
4 0.59 ± 0.02 0.60 ± 0.02 0.59 ± 0.02 0.47 ± 0.02
5 0.57 ± 0.01 0.57 ± 0.01 0.57 ± 0.01 0.51 ± 0.03
6 0.55 ± 0.01 0.56 ± 0.01 0.55 ± 0.01 0.47 ± 0.01
a

Each reliability score is the number of nodes with bootstrap values greater than or equal to 80 divided by the total number of nodes. Standard deviations represent 1 standard deviation from the mean. The genes used in the concatemers are as follows: 16S rRNA gene, ftsZ, gapA, gyrB, recA, or rpoA in 1-gene concatemers, recA and rpoA in 2-gene concatemers, recA, rpoA, and gapA in 3-gene concatemers, 16S rRNA gene, recA, rpoA, and gapA in 4-gene concatemers, 16S rRNA gene, recA, rpoA, gapA, and gyrB in 5-gene concatemers, and 16S rRNA gene, recA, rpoA, gapA, gyrB, and ftsZ in 6-gene concatemers.