TABLE 3.
Complete list of CcBV genes presenting depths of 1 to 4 reads by 454 transcriptomic analysis in two tissues (fat body and hemocytes) in M. sexta 24 h after parasitization by C. congregataa
| Gene | Region position | Signal peptide | No. of reads for fat body | No. of reads for hemocytes |
|---|---|---|---|---|
| ben-13 pseudogene | S27/RU2.3 | 4 | 0 | |
| ben-14 | S24/RU2.3 | No | 2 | 0 |
| ben-2 | S3/RU2.2 | No | 1 | 2 |
| ben-3 | S6/RU1 | No | 5 | 3 |
| ben-5 | S12/RU6.1 | No | 1 | 0 |
| ben-6 pseudogene | S18/RU2.3 | 1 | 0 | |
| ben-7 | S18/RU2.3 | No | 5 | 0 |
| bv2-1 | S2/RU2.1 | Yes | 4 | 2 |
| bv2-4 pseudogene | S19/RU1 | 1 | 0 | |
| bv2-7/Maverick capsid-like p31.10* | S31/RU2.1 | Yes | 4 | 0 |
| bv6-7 | S29/RU2.2 | No | 1 | 0 |
| bv6-9 pseudogene | S28/RU2.3 | 1 | 0 | |
| bv6-14 pseudogene | S28/RU2.3 | 2 | 0 | |
| bv6-15 pseudogene | S32/RU2.3 | 1 | 0 | |
| bv6-20 | S32/RU2.3 | No | 0 | 1 |
| bv6-24 | S35/RU2.3 | No | 1 | 0 |
| bv6-27 | S16/RU2.3 | No | 2 | 0 |
| bv8-5 | S27/RU2.3 | No | 2 | 0 |
| bv8-7 | S32/RU2.3 | No | 1 | 0 |
| bv8-10 | S35/RU2.3 | No | 2 | 0 |
| bv9-1 pseudogene | S29/RU2.2 | 1 | 0 | |
| bv9-3 | S29/RU2.2 | No | 1 | 0 |
| bv9-5 | S28/RU2.3 | No | 2 | 0 |
| bv12-3 | S4/RU7 | No | 3 | 0 |
| bv14-2 | S18/RU2.3 | Yes | 1 | 1 |
| bv16-2 | S5/RU1 | Yes | 4 | 1 |
| bv17-2 pseudogene | S27/RU2.3 | 1 | 0 | |
| bv21-2 | S32/RU9 | No | 2 | 0 |
| bv22-2 | S28/RU2.3 | No | 1 | 0 |
| bv24-2 pseudogene | S28/RU2.3 | 3 | 0 | |
| bv25-2 pseudogene | S31/RU2.1 | 1 | 0 | |
| bv26-2 pseudogene | S33/RU2.1 | 3 | 0 | |
| h4 | S7/RU4 | No | 2 | 0 |
| p94-like1 | S7/RU4 | No | 2 | 0 |
| p94-like2 | S7/RU4 | No | 1 | 0 |
| ptpa | S26/RU8 | No | 0 | 1 |
| ptpc | S10/RU3 | No | 3 | 0 |
| ptpdelta | S26/RU3 | No | 0 | 1 |
| ptpe | S10/RU3 | No | 6 | 3 |
| ptpepsilon pseudogene | S26/RU3 | 0 | 1 | |
| ptpk | S1/RU5 | No | 4 | 0 |
| ptpq | S1/RU5 | No | 0 | 3 |
| ptps | S10/RU3 | No | 0 | 1 |
| ptpu | S14/RU6.2 | No | 2 | 0 |
| ptpx | S17/RU3 | No | 4 | 0 |
| RNAseT2-like3 | S25/RU1 | Yes | 5 | 0 |
| srp1 | S29/RU2.3 | No | 2 | 0 |
| srp2 | S29/RU2.3 | No | 3 | 0 |
| vank-1 | S11/RU6.1 | No | 4 | 0 |
| vank-2 | S15/RU2.3 | No | 5 | 0 |
| vank-7 | S16/RU2.3 | No | 2 | 0 |
| CcBV_12.1 | S12/RU6.1 | No | 1 | 0 |
| CcBV_15.5 | S15/RU2.3 | Yes | 4 | 0 |
| CcBV_20.1b | S20/RU2.1 | No | 1 | 0 |
| CcBV_24.2 | S24/RU2.3 | No | 5 | 0 |
| CcBV_32.6 | S32/RU2.3 | No | 1 | 4 |
| Dong-like1 pseudogene | S31/RU2.1 | 6 | 2 | |
| DIRS gag p31.7/DIRS RT RNaseH p31.6 pseudogene* | S31/RU2.1 | 1 | 0 |
a
The expression levels of these genes are below the limit of detection of the 454 analysis, which was set to 5 reads. Asterisks correspond to genes sharing identical reads.