TABLE 2.
Nucleotide and amino acid divergence of complete WEEV genome ORFs and individual genes compared to the Imperial181 strain
| Strain | % Nucleotide (amino acid) divergence from Imperial181 strain |
|||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Genome | nsP1 | nsP2 | nsP3 | nsP4 | Capsid | E3 | E2 | 6K | E1 | |
| California | 97.3 (98.0) | 98.7 (99.4) | 97.1 (98.9) | 97.0 (97.6) | 97.5 (98.4) | 97.0 (97.3) | 97.2 (96.7) | 96.3 (95.1) | 97.3 (100) | 97.0 (98.6) |
| McMillan | 97.3 (98.1) | 98.7 (99.4) | 97.2 (98.9) | 97.0 (97.6) | 97.5 (98.4) | 97.0 (97.3) | 97.8 (98.3) | 96.3 (95.6) | 97.3 (100) | 97.2 (98.9) |
| BFS932 | 98.0 (98.6) | 99.2 (99.8) | 97.8 (99.1) | 97.5 (98.1) | 98.1 (99.0) | 97.9 (98.1) | 98.3 (98.3) | 97.4 (97.0) | 97.3 (98.0) | 97.9 (99.1) |
| EP6 | 97.9 (98.6) | 99.1 (99.8) | 97.8 (99.1) | 97.6 (98.1) | 98.1 (99.2) | 97.7 (97.7) | 98.3 (98.3) | 97.2 (97.2) | 97.3 (98.0) | 98 (98.9) |
| BFS1703 | 97.8 (98.4) | 98.9 (99.2) | 97.6 (99.1) | 97.2 (97.6) | 97.7 (98.7) | 97.8 (98.1) | 98.3 (98.3) | 97.4 (97.0) | 97.3 (98.0) | 97.7 (98.9) |
| BFS2005 | 97.7 (98.4) | 99 (99.4) | 97.6 (99.0) | 97.2 (97.6) | 97.7 (98.5) | 97.7 (98.1) | 98.3 (98.3) | 97.4 (97.0) | 97.3 (98.0) | 97.7 (98.9) |
| E1416 | 97.8 (98.4) | 98.9 (99.2) | 97.6 (99.1) | 97.2 (97.6) | 97.7 (98.7) | 97.8 (98.1) | 98.3 (98.3) | 97.4 (97.0) | 97.3 (98.0) | 97.7 (98.9) |
| Montana64 | 98.4 (98.8) | 99.2 (99.6) | 98.3 (99.1) | 98.0 (98.5) | 98.7 (99.2) | 98.5 (98.5) | 98.3 (98.3) | 97.7 (97.4) | 98.7 (98.0) | 98.2 (99.3) |
| S8122 | 98.2 (98.8) | 99.2 (99.8) | 98.1 (99.0) | 97.9 (98.3) | 98.4 (99.3) | 98.3 (98.5) | 98.3 (98.3) | 97.7 (97.4) | 98 (100) | 98 (99.3) |
| TBT235 | 98.6 (99.0) | 99.3 (99.6) | 98.6 (99.2) | 97.8 (98.5) | 99.1 (99.5) | 99.1 (99.2) | 98.3 (98.3) | 98.1 (97.7) | 98.0 (98.0) | 98.3 (99.1) |
| BFN3060 | 98.2 (98.7) | 99.2 (99.8) | 98.1 (99.0) | 97.9 (98.1) | 98.4 (99.3) | 98.1 (98.2) | 98.3 (98.3) | 97.7 (97.4) | 98.0 (100) | 97.8 (98.6) |
| 71V1658 | 98.2 (98.7) | 99.5 (99.8) | 98.2 (99.0) | 97.7 (98.1) | 98.5 (99.2) | 97.9 (98.1) | 97.2 (96.7) | 97.4 (97.0) | 98.0 (98.0) | 98.1 (99.3) |
| 75V9291 | 98.2 (98.8) | 99.2 (99.8) | 98.2 (99.1) | 97.6 (98.1) | 98.5 (99.0) | 97.8 (98.5) | 97.8 (98.3) | 97.7 (97.7) | 98.0 (98.0) | 98.2 (99.3) |
| BFS09997 | 97.7 (98.4) | 98.9 (99.2) | 97.6 (99.1) | 97.2 (97.6) | 97.7 (98.7) | 97.8 (98.1) | 98.3 (98.3) | 97.2 (96.5) | 97.3 (98.0) | 97.7 (98.9) |
| KERN5547 | 98.9 (99.2) | 99.4 (99.8) | 98.7 (99.2) | 98.6 (98.7) | 99.2 (99.7) | 99.4 (99.6) | 98.3 (98.3) | 98.6 (98.6) | 98 (96.0) | 98.6 (99.5) |
| CHLV53 | 98.8 (99.1) | 99.4 (99.8) | 98.6 (99.1) | 98.6 (98.9) | 99.1 (99.5) | 99.1 (99.6) | 98.3 (98.3) | 98.3 (98.4) | 98 (96.0) | 98.8 (99.5) |
| 85452NM | 99.2 (99.4) | 99.7 (99.8) | 99.2 (99.6) | 99.0 (99.1) | 99.3 (99.5) | 99.5 (100) | 98.3 (98.3) | 98.9 (98.8) | 98.7 (98.0) | 99.1 (99.5) |
| PV02808A | 97.7 (98.7) | 99.1 (99.8) | 97.3 (99.0) | 97.0 (97.9) | 98.2 (99.3) | 97.7 (98.1) | 96.7 (98.23) | 97.3 (97.2) | 97.3 (96.0) | 97.7 (99.3) |
| IMPR441 | 99.0 (99.2) | 99.2 (99.6) | 99.0 (99.5) | 98.8 (98.3) | 99.2 (99.5) | 99.0 (100) | 98.3 (98.3) | 98.8 (98.8) | 98.7 (98.0) | 98.9 (99.5) |
| CO921356 | 97.7 (98.6) | 99.1 (99.8) | 97.3 (99.0) | 96.9 (97.6) | 98.2 (99.3) | 97.4 (98.1) | 96.7 (98.3) | 97.4 (97.2) | 97.3 (96.0) | 97.8 (99.3) |
| 93A38 | 97.7 (98.6) | 99.1 (99.8) | 97.4 (98.9) | 97.1 (97.7) | 98.0 (99.2) | 97.7 (98.1) | 96.7 (98.3) | 97.4 (97.2) | 97.3 (96.0) | 97.7 (99.3) |
| 93A27 | 99.0 (99.2) | 99.4 (99.6) | 99.0 (99.6) | 98.8 (98.5) | 99.0 (99.3) | 99.1 (100) | 98.3 (98.3) | 98.5 (98.8) | 98.7 (98.0) | 98.9 (99.3) |
| 93A30 | 99.5 (99.7) | 99.8 (99.8) | 99.6 (99.9) | 99.4 (99.6) | 99.5 (99.6) | 99.6 (100) | 98.3 (98.3) | 99.4 (99.3) | 99.3 (100) | 99.2 (99.5) |
| 93A79 | 99.0 (99.4) | 99.6 (99.8) | 98.9 (99.6) | 98.8 (99.1) | 99.0 (99.7) | 99.2 (99.6) | 98.3 (98.3) | 98.7 (98.8) | 98.7 (98.0) | 99.0 (99.5) |
| CNTR34 | 97.7 (98.6) | 99.0 (99.8) | 97.4 (99.0) | 97.0 (97.7) | 98.0 (99.3) | 97.7 (98.1) | 96.7 (98.3) | 97.3 (97.2) | 97.3 (96.0) | 97.7 (99.3) |
| Lake43 | 97.7 (98.6) | 99.1 (99.8) | 97.4 (98.9) | 96.9 (97.6) | 98.1 (99.3) | 97.7 (98.1) | 96.7 (98.3) | 97.4 (97.2) | 97.3 (96.0) | 97.7 (99.3) |
| PV71202 | 99.5 (99.7) | 99.6 (99.8) | 99.5 (99.9) | 99.4 (99.6) | 99.6 (99.8) | 99.7 (100) | 98.3 (98.3) | 99.4 (99.3) | 99.3 (100) | 99.3 (99.8) |
| PV012357A | 99.6 (99.7) | 99.7 (99.8) | 99.6 (99.7) | 99.4 (99.4) | 99.8 (99.8) | 99.9 (100) | 99.4 (100) | 99.5 (99.5) | 100 (100) | 99.5 (99.8) |
| R02PV002957B | 99.6 (99.8) | 99.9 (100) | 99.5 (99.7) | 99.2 (99.4) | 99.7 (99.8) | 99.9 (100) | 99.4 (100) | 99.4 (99.5) | 100 (100) | 99.5 (99.8) |
| R02PV001807A | 99.6 (99.7) | 99.7 (99.8) | 99.6 (99.7) | 99.4 (99.2) | 99.8 (99.8) | 99.9 (100) | 99.4 (100) | 99.5 (99.5) | 100 (100) | 99.5 (99.8) |
| R02PV003422B | 99.9 (100) | 99.9 (100) | 99.9 (100) | 99.8 (100) | 99.9 (100) | 99.9 (100) | 100 (100) | 99.8 (100) | 100 (100) | 99.9 (100) |
| R0PV003814A | 99.9 (99.9) | 99.7 (99.8) | 99.9 (100) | 99.7 (99.8) | 99.9 (100) | 99.9 (100) | 100 (100) | 99.8 (100) | 100 (100) | 100 (100) |