Table 1. Coverage and read depth following targeted capture and next generation sequencing for the 4 patient verification study.
Sample | Tag | Aligned Reads | Reads on target | % Reads on target | Mean coverage | % ≥5 | % ≥10 | % ≥15 | % ≥20* | % ≥30 | % ≥50 |
Patient A tag1 | CAACCT | 6,296,720 | 1,310,107 | 20.8% | 133 | 98.5 | 97.7 | 96.8 | 95.7 | 93.3 | 86.5 |
Patient B tag2 | AACCAT | 5,788,340 | 1,359,182 | 23.5% | 137 | 98.4 | 97.5 | 96.6 | 95.6 | 93.4 | 87.9 |
Patient C tag3 | AAGGAT | 8,539,613 | 2,174,816 | 25.5% | 220 | 98.7 | 98.2 | 97.6 | 96.9 | 95.9 | 93.1 |
Patient D tag4 | AATTAT | 4,314,207 | 1,609,443 | 37.3% | 164 | 98.5 | 97.6 | 96.7 | 95.8 | 93.9 | 88.8 |
Patient tag1 to 4, AVERAGE | 98.5 | 97.8 | 96.9 | 96.0 | 94.1 | 89.1 |
The tagging, aligned reads, reads on target, % reads on target, mean coverage and % coverage with a particular minimum read depth are shown for each patient DNA. The asterix highlights the % coverage with a greater than or equal to 20 read depth.