Table 2. Parameters of MutS binding to DNA, ATP hydrolysis and nucleotide exchange in ATPase domain of protein.
Duplex number (X/Y)a | Initial rates (v 0) of ATP hydrolysis by MutS | Dissociation constants (K d) of MutS complexes with DNA | Rate constants of ADP exchange (k off mant-ADP) in ATPase domain of MutS | ||
v 0, nM·s−1 | Rel. v 0 b | K d, nM | k off, s−1 | Rel. k off c | |
MutS without DNA | 0.37±0.018 | 1.0 | - | 0.012±0.001 | 1.0 |
I (G/C) | 0.77±0.069 | 2.1 | 32±3.3 | 0.047±0.001 | 3.9 |
II (G/T) | 0.75±0.073 | 2.0 | 7±1.5 | 0.28±0.013 | 23.0 |
III (G/Tg) | 0.66±0.036 | 1.8 | 44±2.3 | 0.037±0.015 | 3.0 |
IV (A/Tg) | 0.69±0.011 | 1.9 | 25±3.0 | 0.025±0.001 | 2.1 |
Variable nucleotide pair.
The ratio of v 0 of ATP hydrolysis by MutS in the absence or in the presence of duplexes I–IV to v 0 of ATP hydrolysis by MutS in the absence of DNA.
The ratio of rate constant of mant-ADP dissociation from its complex with MutS (k off mant-ADP) in the absence or in the presence of duplexes I–IV to k off mant-ADP in the absence of DNA.
The error of the mean indicates a SEM.