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. 2014 Aug 18;9(8):e104963. doi: 10.1371/journal.pone.0104963

Table 2. Parameters of MutS binding to DNA, ATP hydrolysis and nucleotide exchange in ATPase domain of protein.

Duplex number (X/Y)a Initial rates (v 0) of ATP hydrolysis by MutS Dissociation constants (K d) of MutS complexes with DNA Rate constants of ADP exchange (k off mant-ADP) in ATPase domain of MutS
v 0, nM·s−1 Rel. v 0 b K d, nM k off, s−1 Rel. k off c
MutS without DNA 0.37±0.018 1.0 - 0.012±0.001 1.0
I (G/C) 0.77±0.069 2.1 32±3.3 0.047±0.001 3.9
II (G/T) 0.75±0.073 2.0 7±1.5 0.28±0.013 23.0
III (G/Tg) 0.66±0.036 1.8 44±2.3 0.037±0.015 3.0
IV (A/Tg) 0.69±0.011 1.9 25±3.0 0.025±0.001 2.1
a

Variable nucleotide pair.

b

The ratio of v 0 of ATP hydrolysis by MutS in the absence or in the presence of duplexes I–IV to v 0 of ATP hydrolysis by MutS in the absence of DNA.

c

The ratio of rate constant of mant-ADP dissociation from its complex with MutS (k off mant-ADP) in the absence or in the presence of duplexes I–IV to k off mant-ADP in the absence of DNA.

The error of the mean indicates a SEM.