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. 2014 Jun 3;31(9):2483–2495. doi: 10.1093/molbev/msu182

Table 1.

List of the Ten SNPs with Largest Bayes Factors for Each of the Four Factors Obtained with the HGDP Data Set.

Chromosome rs Identifier Physical Positiona Closest Gene Dist.b Log10(BF)c Factor No.
chr 10 4918664 94911055 CYP26A1 83 2.8 1
chr 10 10882168 94919424 CYP26A1 92 2.7 1
chr 10 7091054 95008434 MYOF 48 2.7 1
chr 10 11187300 94910281 CYP26A1 83 2.6 1
chr 2 7556886 17771611 SMC6 0 2.6 1
chr 10 12220128 94965001 MYOF 91 2.5 1
chr 10 6583859 94883463 CYP26A1 56 2.5 1
chr 10 4918924 94966946 MYOF 89 2.4 1
chr 2 1834619 17764966 SMC6 0 2.4 1
chr 2 4578856 17716869 SMC6 0 2.4 1
chr 15 1834640 46179457 SLC24A5 21 5.1 2
chr 15 2250072 46172199 SLC24A5 29 4.2 2
chr 2 260714 108928927 EDAR 0 3.2 2
chr 1 7531501 232404926 SLC35F3 0 2.9 2
chr 15 11637235 46420445 DUT 0 2.9 2
chr 9 10760260 124753347 RABGAP1 0 2.9 2
chr 9 2416899 125054924 STRBP 0 2.8 2
chr 5 2406410 132093779 KIF3A 0 2.8 2
chr 15 3751631 50321636 MYO5C 0 2.8 2
chr 9 618746 124777344 RABGAP1 0 2.8 2
chr 22 139553 40517145 MEI1 0 4.1 3
chr 22 5996039 40311903 PMM1 0 4.0 3
chr 22 8139993 40325281 DESI1 0 4.0 3
chr 22 126092 40508387 MEI1 0 4.0 3
chr 22 1005402 39621676 XPNPEP3 0 3.6 3
chr 22 8137373 40059162 ZC3H7B 0 3.6 3
chr 22 133074 39408419 MCHR1 0 3.6 3
chr 22 9611613 40291777 CSDC2 0 3.5 3
chr 20 2424641 24665867 SYNDIG1 71 3.5 3
chr 14 2600814 46054248 LINC00871 13 3.5 3
chr 8 16892216 120271074 MAL2 19 2.8 4
chr 8 6990312 110671493 SYBU 0 2.8 4
chr 17 9908046 50918781 MMD 64 2.7 4
chr 17 575873 39055489 MEOX1 18 2.6 4
chr 4 4691075 164468935 NPY1R 0 2.6 4
chr 17 4471745 50923883 MMD 70 2.5 4
chr 14 12891534 80069114 CEP128 0 2.5 4
chr 8 6988341 110653602 SYBU 2 2.5 4
chr 8 12216712 9933221 MSRA 16 2.5 4
chr 17 11869714 45942306 MYCBPAP 0 2.5 4

aThe positions are given for the NCBI36 assembly.

bDist. is the distance from the closest gene and is measured in kilobase pairs.

cLog10(BF) is the logarithm (in base 10) of the Bayes factor.