Skip to main content
. 2014 Aug 19;9(8):e104423. doi: 10.1371/journal.pone.0104423

Table 8. Overview of putative chloroplast localized proteins in rice (subsp. Japonica) with characteristic domains of CCV and COPI subunit counterparts.

Subunits Putative chloroplast localized proteins holding domains characteristics for each subunit respectively
CCV
Clathrin heavy chain Clathrin heavy chain 1 (LOC_Os11g01380), Clathrin heavy chain 2 (LOC_Os12g01390)
AP1 γ subunit Probable L-ascorbate peroxidase 7 (APX7) (LOC_Os04g35520), Probable L-ascorbate peroxidase 8 (APX8) (LOC_Os02g34810)
AP1 β1 subunit Armadillo/beta-catenin-like repeat family protein (LOC_Os11g41990)*, Adaptin, putative (LOC_Os01g43630)*, AP-3 complex subunit delta (LOC_Os01g32880)*
AP2 β2 subunit Armadillo/beta-catenin-like repeat family protein (LOC_Os11g41990)*, Carbamoyl-phosphate synthase large chain (CARB) (LOC_Os01g38970), Acetyl-CoA carboxylase 2 (ACC2) (LOC_Os05g22940), Adaptin, putative (LOC_Os01g43630)*, AP-3 complex subunit delta (LOC_Os01g32880)*
AP2 μ2 subunit Adaptor complexes medium subunit family protein (LOC_Os12g34370)*
AP3 δ subunit Armadillo/beta-catenin-like repeat family protein (LOC_Os11g41990)*, Adaptin, putative (LOC_Os01g43630)*, AP-3 complex subunit delta (LOC_Os01g32880)*
AP3 β3 subunit Armadillo/beta-catenin-like repeat family protein (LOC_Os11g41990)*, Adaptin, putative (LOC_Os01g43630)*, AP-3 complex subunit delta (LOC_Os01g32880)*
AP3 μ3 subunit Adaptor complexes medium subunit family protein (LOC_Os12g34370)*
AP4 β4 subunit Adaptin, putative (LOC_Os01g43630)*
AP4 ε subunit Armadillo/beta-catenin-like repeat family protein (LOC_Os11g41990)*, Adaptin, putative (LOC_Os01g43630)*, AP-3 complex subunit delta (LOC_Os01g32880)*
AP5 μ5 subunit Adaptor complexes medium subunit family protein (LOC_Os12g34370)*
COPI
B-COPI α-subunit Guanine nucleotide-binding protein subunit beta (LOC_Os03g46650)*
B-COPI β′-subunit Guanine nucleotide-binding protein subunit beta (LOC_Os03g46650)*, Regulatory-associated protein of TOR 1 (RAPTOR1) (LOC_Os12g01922)
B-COPI ε-subunit PPR repeat containing protein (LOC_Os07g14530)
F-COPI δ subunit Adaptor complexes medium subunit family protein (LOC_Os12g34370)*
F-COPI ζ-subunit Magnesium-chelatase subunit ChlD (LOC_Os03g59640)
Coat GTPases
ArfA group Mitochondrial Rho GTPase (LOC_Os03g59590)*
ArfB group Mitochondrial Rho GTPase (LOC_Os03g59590)*
ArfB2 group Mitochondrial Rho GTPase (LOC_Os03g59590)*
ArfD group Mitochondrial Rho GTPase (LOC_Os03g59590)*

* = proteins with several assigned roles, having common occurring domains.