Table 1.
Calculated binding free energies of D-chicoric acid and lomofungin at the exosites of BoNT/A.
Probe | Binding Cluster | Binding site | Binding mode | ΔG (kcal/mol) |
---|---|---|---|---|
D-chicoric acid | Cluster 1 | α-exosite | 1 | −32.6 |
2 | −22.0 | |||
3 | −23.7 | |||
Cluster 2 | β-exosite (A) | 1 | −17.3 | |
2 | −27.1 | |||
3 | −8.1 | |||
Cluster 3 | anchor exosite | 1 | −26.6 | |
2 | −15.9 | |||
3 | −11.0 | |||
lomofungin | Cluster 1 | β-exosite (A) | 1 | −22.5 |
2 | −22.0 | |||
3 | −13.7 | |||
Cluster 2 | β-exosite (B) | 1 | −21.1 | |
2 | −20.9 | |||
3 | −10.8 | |||
Cluster 3 | anchor exosite | 1 | −12.8 | |
2 | −15.5 | |||
3 | −16.1 |