Table 3.
Grouping of haplotypes within haplotype blocks*
| (3a) Haplotype block 1 | |||||
|---|---|---|---|---|---|
| rs4792886 | rs110402 | rs242924 | Haplotype Frequencies | ||
| Cases (%) | Control (%) | ||||
| G | C | C | H1 | 45 | 44 |
| G | T | A | H2 | 46 | 46 |
| A | C | C | H3 | 9 | 10 |
| (3b) Haplotype Block 2 | |||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| rs242942 | rs3785877 | rs171440 | rs242939 | rs4566211 | rs242936 | rs17762954 | rs173365 | rs1396862 | rs17763086 | rs17763104 | rs16940665 | rs17689918 | rs17689966 | rs1876829 |
Haplotype
Frequencies |
||
| Cases (%) |
Control (%) |
||||||||||||||||
| G | G | C | A | A | C | T | T | T | G | G | C | A | G | G | H1 | 23 | 21 |
| G | G | C | A | G | C | C | C | C | T | A | T | G | A | A | H2 | 12 | 12 |
| G | G | C | A | G | C | C | T | C | T | G | T | G | G | A | H3 | 6 | 6 |
| G | G | T | A | G | C | C | C | C | T | G | T | G | A | A | H4 | 45 | 45 |
| G | G | T | A | G | T | C | T | C | T | G | T | G | G | A | H5 | 3 | 4 |
| A | G | C | G | G | T | C | T | C | T | G | T | G | G | A | H6 | 7 | 7 |
| A | A | C | A | G | C | C | T | C | T | G | T | G | G | A | H7 | 4 | 4 |
*
Base pairs in shaded boxes indicate the minor allele for that SNP.