Table 1. Comparison of the Oxidative Half-Reaction Rate Constants of Variantsa.
enzyme | k1 (s–1) | k2 (s–1) | k3 (s–1)b |
---|---|---|---|
WT | 28.4 ± 0.8 | 0.20 ± 0.01 | – |
Q75A | 2.2 ± 0.3 | 0.074 ± 0.002 | 0.003 ± 0.0005 |
R90A | 0.33 ± 0.01 | 0.026 ± 0.01 | – |
R174A | 6.8 × 10–5 ± 1.6 × 10–7 | – | – |
Y91A | 0.53 ± 0.04 | 0.007 ± 0.0001 | 0.001 ± 0.0002 |
S88A | 0.82 ± 0.05 | 0.06 ± 0.002 | 0.019 ± 0.0005 |
An anaerobic solution of reduced enzyme (14 μM active sites) and dUMP (300 μM) was mixed with 400 μM CH2THF using a stopped-flow spectrophotometer. The reactions were monitored at 420 nm, and the traces were fit to a sum of exponentials. Reactions were conducted in 0.1 M Tris-HCl (pH 8.0) with 1 mM EDTA and 15 mM CH2O at 25 °C.
Some reaction traces required a third exponential to fit a small increase in absorbance at the end of the reaction. We speculate that this small phase was caused by the reassociation and subsequent oxidation of a small amount of free FAD that dissociated during the preparation.