Table 2. Novel and uncharacterized transcripts in the regenerating tail.
| Gene ID | Transcript ID | CNCI score | CNCI classification | Length (bp) | Longest ORF (bp) | Domain/Homology | Highest Section | |
| Predicted RNA only | ||||||||
| ASU_Acar_G.1063 | ASU_Acar_T.1063.1 | 0.0 | non-coding | 216 | 213 | lncRNA | S1 | |
| ASU_Acar_G.14483 | ASU_Acar_T.14483.1 | −0.0029 | non-coding | 698 | 153 | lncRNA | S4 | |
| ASU_Acar_G.14483 | ASU_Acar_T.14483.2 | −0.0784 | non-coding | 1256 | 195 | lncRNA | S4 | |
| ASU_Acar_G.14483 | ASU_Acar_T.14483.5 | −0.0029 | non-coding | 712 | 153 | lncRNA | S2 | |
| ASU_Acar_G.14483 | ASU_Acar_T.14483.7 | −0.0029 | non-coding | 1430 | 195 | lncRNA | - | |
| ASU_Acar_G.17546 | ASU_Acar_T.17546.1 | −0.0390 | non-coding | 225 | 222 | lncRNA | S1 | |
| ASU_Acar_G.17964 | ASU_Acar_T.17964.1 | −0.1550 | non-coding | 219 | 123 | lncRNA | S4 | |
| ASU_Acar_G.5235 | ASU_Acar_T.5235.1 | 0.0 | non-coding | 216 | 213 | lncRNA | S3 | |
| ASU_Acar_G.7180 | ASU_Acar_T.7180.1 | −0.0038 | non-coding | 243 | 240 | lncRNA | S5 | |
| ASU_Acar_G.8849 | ASU_Acar_T.8849.1 | −0.0532 | non-coding | 291 | 288 | lncRNA | S4 | |
| ASU_Acar_G.8944 | ASU_Acar_T.8944.1 | −0.2007 | non-coding | 279 | 276 | lncRNA | S1 | |
| ASU_Acar_G.20175 | ASU_Acar_T.20175.1 | −0.0204 | non-coding | 261 | 258 | lncRNA | S1 | |
| ASU_Acar_G.1922 | ASU_Acar_T.1922.1 | −0.0114 | non-coding | 2286 | 213 | mir-133 | S5 | |
| ASU_Acar_G.19355 | ASU_Acar_T.19355.1 | −0.0064 | non-coding | 2549 | 219 | mir-324 | S5 | |
| ASU_Acar_G.10886 | ASU_Acar_T.10886.1 | −0.1770 | non-coding | 637 | 384 | ncRNA | S1 | |
| ASU_Acar_G.13829 | ASU_Acar_T.13829.1 | −0.0563 | non-coding | 189 | 186 | ncRNA | S4 | |
| ASU_Acar_G.14483 | ASU_Acar_T.14483.4 | 0.0 | non-coding | 183 | 180 | ncRNA | S3 | |
| ASU_Acar_G.14483 | ASU_Acar_T.14483.6 | −0.0073 | non-coding | 459 | 456 | ncRNA | S4 | |
| ASU_Acar_G.14791 | ASU_Acar_T.14791.1 | 0.0 | non-coding | 199 | 114 | ncRNA | S1 | |
| ASU_Acar_G.1721 | ASU_Acar_T.1721.1 | −0.0170 | non-coding | 192 | 189 | ncRNA | S2 | |
| ASU_Acar_G.2935 | ASU_Acar_T.2935.1 | 0.0000 | non-coding | 195 | 192 | ncRNA | S1 | |
| ASU_Acar_G.3586 | ASU_Acar_T.3586.1 | 0.0000 | non-coding | 195 | 192 | ncRNA | S1 | |
| Protein Coding - Not Described | ||||||||
| ASU_Acar_G.15880 | ASU_Acar_T.15880.1 | 0.1481 | coding | 14705 | 4992 | DUF4585 | S2 | |
| ASU_Acar_G.14483 | ASU_Acar_T.14483.3 | 0.0510 | coding | 3395 | 2766 | unknown | S5 | |
| ASU_Acar_G.19198 | ASU_Acar_T.19198.1 | 0.0293 | coding | 264 | 261 | unknown | S1 | |
| Retrotransposons | ||||||||
| ASU_Acar_G.14133 | ASU_Acar_T.14133.1 | 0.2166 | coding | 3618 | 3615 | gag-pol polyprotein | S5 | |
| ASU_Acar_G.591 | ASU_Acar_T.591.1 | 0.1336 | coding | 762 | 759 | gag-pol polyprotein | S3 | |
| ASU_Acar_G.591 | ASU_Acar_T.591.2 | −0.0102 | non-coding | 198 | 195 | gag-pol polyprotein | S5 | |
| ASU_Acar_G.4168 | ASU_Acar_T.4168.1 | 0.0918 | coding | 2010 | 1863 | rna-directed dna polymerase from mobile element jockey-like | S5 |