Table 2. Cyanobacterial natural product gene clusters detected in Kranji reservoir.
Cluster no. | Pathway type | Pathway name | Reference strain | GI nos. | No. of genes in cluster | No. of genes shared | KS/C domains in pathway | Total KS/C reads | Reference |
---|---|---|---|---|---|---|---|---|---|
1 | PKS/NRPS | Microcystin | M. aeruginosa PCC7806 | 6007547–6007556 | 12 | 10 | 4/6 | 238/249 | Tillett et al., 2000 |
2 | PKS | Lectin like | M. aeruginosa M228 | 7288161–7288163 | 3 | NA | 1/0 | 12/0 | Jimbo et al., 2000 |
3 | PKS/NRPS | psm3 | M. aeruginosa K-139 | 150445937–150445949 | 13 | NA | 1/4 | 12/11 | Nishizawa et al., 2007 |
4 | PKS/NRPS/FAS | None | M. aeruginosa NIES-843 | 166365520–166365529 | 10 | 1 | 3/2 | 857/163 | Shulse and Allen, 2011 |
5 | PKS | NIES-843 enediyne | M. aeruginosa NIES-843 | 166364025 | 1 | 1 | 1/0 | 168/0 | Frangeul et al., 2008 |
6 | PKS | PKS iterative | M. aeruginosa PCC7806 | 159028726–159028735 | 10 | 1 | 1/0 | 100/0 | Frangeul et al., 2008 |
7 | PKS | PKS1/PKS 3 | M. aeruginosa PCC7806 | 159029973–159029981 | 9 | 3 | 3/0 | 105/0 | Frangeul et al., 2008 |
8 | NRPS | Cyanopeptolin | M. aeruginosa NIES-843 | 166368741–166368744 | 4 | 4 | 0/6 | 0/106 | Frangeul et al, 2008 |
9 | NRPS | Aeruginosin | M. aeruginosa PCC7806 | 159030043–159030054 | 13 | 10 | 0/4 | 0/161 | Frangeul et al., 2008 |
10 | NRPS | Micropeptin | M. aeruginosa K-139 | 223717788–223717791 | 4 | NA | 0/7 | 0/133 | Nishizawa et al., 2011 |
11 | NRPS | Oscillapeptin | Planktothrix rubescens NIVA-CYA 98 | 258380691–258380695 | 5 | NA | 0/4 | 0/24 | Blom et al., 2003 |
12 | NRPS | Anabaenopeptin | Planktothrix agardhii NIVA-CYA 126/8 | 157804708–157804711 | 4 | NA | 0/4 | 0/38 | Christiansen et al., 2011 |
13 | PKS/NRPS | Microginin | Planktothrix rubescens NIVA-CYA 98 | 258380635–258380636 | 2 | NA | 1/3 | 0/6 | Rounge et al., 2009 |
14 | NRPS | None | Acaryochloris marina MBIC11017 | 158339498–158339499 | 2 | NA | 0/2 | 0/2 | Swingley et al., 2008 |
15 | NRPS | None | Cyanothece sp. PCC8802 | 257059705 | 1 | NA | 0/3 | 0/8 | Welsh et al., 2008 |
Note: The newly identified PKS and NRPS gene clusters (MIC2 and MIC3) from recently sequenced Microcystis reference strains (Humbert et al., 2013) were not detected in Kranji Reservoir samples. MIC1 from Humbert et al. (2013) is defined here as Cluster 4.