Table 1. The significant SNPs and their nearby genes in the analysis of Chinese dairy cattle data.
| Trait | SNP | Chr | Position (bp) | Heritability | Nearest Gene | |
| Gene | Distance(bp) | |||||
| MY | ARS-BFGL-NGS-4939a | 14 | 1801116 | 6.26E-02 | DGAT1 | Within |
| Hapmap47777-BTA-91000 | X | 1.41E+08 | 9.81E-03 | LOC785455 | 81004 | |
| ARS-BFGL-NGS-49079a | 9 | 6574398 | 9.05E-03 | NA | NA | |
| ARS-BFGL-NGS-103091 | 5 | 74518588 | 8.14E-03 | RBFOX2 | 45586 | |
| Hapmap60955-rs29022431 | 23 | 21292766 | 7.83E-03 | NA | NA | |
| ARS-BFGL-NGS-11319 | 2 | 6763227 | 7.69E-03 | SLC40A1 | 22898 | |
| Hapmap48369-BTA-50306 | 1 | 7627111 | 7.39E-03 | NA | NA | |
| FY | ARS-BFGL-NGS-4939a | 14 | 1801116 | 2.63E-02 | DGAT1 | Within |
| Hapmap42263-BTA-60093 | 25 | 35342491 | 1.18E-02 | MIR2388 | 42285 | |
| Hapmap40191-BTA-73919a | 5 | 71978791 | 7.54E-03 | SYN3 | 52073 | |
| PY | ARS-BFGL-BAC-6525 | 10 | 92127288 | 1.94E-02 | NRXN3 | Within |
| ARS-BFGL-NGS-115291 | 4 | 4090824 | 1.70E-02 | NA | NA | |
| ARS-BFGL-NGS-39539 | 23 | 41457147 | 1.05E-02 | JARID2 | 154416 | |
| ARS-BFGL-NGS-4939a | 14 | 1801116 | 1.02E-02 | DGAT1 | Within | |
| ARS-BFGL-NGS-110497 | 26 | 45870133 | 9.98E-03 | ADAM12 | Within | |
| ARS-BFGL-NGS-29581 | 4 | 1.14E+08 | 9.66E-03 | KCNH2 | Within | |
| FP | ARS-BFGL-NGS-4939a | 14 | 1801116 | 0.179094 | DGAT1 | Within |
| Hapmap50271-BTA-17442 | 5 | 81903458 | 2.68E-02 | CCDC91 | Within | |
| ARS-BFGL-NGS-111443 | 5 | 94269370 | 1.21E-02 | DERA | 46923 | |
| Hapmap51303-BTA-74377a | 5 | 83790390 | 1.18E-02 | ITPR2 | Within | |
| ARS-BFGL-NGS-118998 | 20 | 32030332 | 1.03E-02 | GHR | Within | |
| Hapmap39717-BTA-112973 | 2 | 26781358 | 8.62E-03 | KBTBD10 | Within | |
| BTB-00231742 | 5 | 77095345 | 8.15E-03 | NA | NA | |
| BTB-00285653 | 8 | 30036807 | 7.72E-03 | NFIB | Within | |
| BTB-00777571 | 20 | 34017024 | 6.96E-03 | NA | NA | |
| ARS-BFGL-NGS-113507 | 11 | 98407974 | 6.38E-03 | PTRH1 | Within | |
| PP | ARS-BFGL-NGS-4939a | 14 | 1801116 | 3.52E-02 | DGAT1 | Within |
| BTA-39609-no-rs | 0 | 0 | 1.63E-02 | — | — | |
| Hapmap48524-BTA-92140a | 5 | 75684520 | 1.58E-02 | NCF4 | 24751 | |
| BTA-50402-no-rsa | 20 | 34451383 | 1.50E-02 | NA | NA | |
| BTB-01844123 | X | 307557 | 1.30E-02 | NA | NA | |
| BTA-121739-no-rsa | 6 | 38063313 | 1.17E-02 | PKD2 | Within | |
| Hapmap54188-rs29022489 | 6 | 75017253 | 1.11E-02 | NA | NA | |
| Hapmap24324-BTC-062449a | 6 | 37631640 | 1.07E-02 | PIGY | 45459 | |
| ARS-BFGL-NGS-111443 | 5 | 94269370 | 1.04E-02 | DERA | 46923 | |
| ARS-BFGL-NGS-107037 | 10 | 46486647 | 9.55E-03 | USP3 | Within | |
| ARS-BFGL-NGS-61452 | 4 | 75250982 | 9.15E-03 | HUS1 | 91623 | |
| ARS-BFGL-NGS-53343 | 6 | 29709875 | 8.08E-03 | NA | NA | |
| ARS-BFGL-NGS-117896 | 28 | 35874524 | 7.50E-03 | MAT1A | Within | |
| Hapmap42216-BTA-45665 | 19 | 45934555 | 7.45E-03 | GOSR2 | Within | |
| Hapmap50621-BTA-21320 | 6 | 64425164 | 7.31E-03 | NA | NA | |
| ARS-BFGL-NGS-53398 | X | 21953655 | 7.30E-03 | MAGEA11 | Within | |
| Hapmap38455-BTA-100999 | 9 | 76346736 | 6.94E-03 | OLIG3 | 63196 | |
| BTA-48480-no-rs | 2 | 95119968 | 6.70E-03 | ADAM23 | 25151 | |
a
SNP are also detected by SMMA; NA: there is no assigned gene around the SNP in a distance of 200 kb; —: the SNPs with unknown positions.