Table 3.

Phages present in the set of 31  V. cholerae genomes from the SEED database

Phage	Source	Initially identified in genome	Genomes
CTX	PhAnToMe id 141904.3, RefSeq id NC_015209	N16961	195
RS	PhAnToMe id 141904.3, RefSeq id NC_015209	N16961	115
Kappa	PhAnToMe id 493906.2; RefSeq id NC_010275	1587, AM-19226, B33, MJ-1236, MO10, NCTC-8457, RC9, RC27	53
WASA	Ref. [33]	INDRE-91/1	18
Mu-like	Identified using PhiSpy [21]	12129(1), TM-11079-80, TMA-21, V51	10
VP882	Identified using PhiSpy [21]	AM-19226, TM-11079-80	5

The phages in this table were mapped by homology to all V. cholerae genomes (see Methods).