Figure 4.
Secondary structure of α12 in equilibrium and at a pulling force of 5 pN. (A) The α-helical conformation of α12 along the sequence from the N- (bottom) to the C-terminal side (top) in five independent equilibrium simulations. (B) The α-helical conformation of α12 in five independent FCMD simulations using a constant pulling force of 5 pN. (C) Percentage of α-helical residues in α12 in equilibrium (black) and under force (red). (Inset, top) Helicity of α12 in the second half of five independent simulations. (Inset, bottom) End-to-end distance of α12 in the final 100 ns of five independent simulations. Secondary structure calculations have been done with DSSP (37). Applying a force of 5 pN moves the conformational ensemble of α12 toward structures of higher helical content.