Table 2.
Nucleotide and amino acid divergence between El Paso and Cuidad Juarez WNV isolatesa
Group 1 | Group 2 | Group 3 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Strain | NY99 | TM171-03 | TX5282 | TX7465 | TX5718 | TX6866 | TX5947 | TX6115 | TX2686 | TX6745 | TX6572 |
NY99 | - | 0.41 | 0.61 | 0.64 | 0.65 | 0.43 | 0.46 | 0.54 | 0.41 | 0.39 | 0.53 |
TM171-03 | 0.09 | - | 0.87 | 0.89 | 0.92 | 0.69 | 0.73 | 0.81 | 0.67 | 0.63 | 0.77 |
TX5282 | 0.32 | 0.44 | - | 0.15 | 0.06 | 0.74 | 0.78 | 0.86 | 0.72 | 0.68 | 0.82 |
TX7465 | 0.26 | 0.38 | 0.12 | - | 0.19 | 0.79 | 0.83 | 0.92 | 0.76 | 0.76 | 0.90 |
TX5718 | 0.41 | 0.52 | 0.09 | 0.20 | - | 0.80 | 0.83 | 0.92 | 0.79 | 0.75 | 0.89 |
TX6866 | 0.26 | 0.38 | 0.52 | 0.47 | 0.61 | - | 0.07 | 0.17 | 0.53 | 0.52 | 0.65 |
TX5947 | 0.26 | 0.38 | 0.52 | 0.47 | 0.61 | 0.06 | - | 0.19 | 0.56 | 0.56 | 0.70 |
TX6115 | 0.35 | 0.47 | 0.61 | 0.55 | 0.70 | 0.15 | 0.09 | - | 0.64 | 0.63 | 0.76 |
TX2686 | 0.20 | 0.35 | 0.38 | 0.35 | 0.50 | 0.35 | 0.35 | 0.44 | - | 0.33 | 0.46 |
TX6745 | 0.15 | 0.26 | 0.29 | 0.23 | 0.38 | 0.29 | 0.29 | 0.38 | 0.17 | - | 0.26 |
TX6572 | 0.26 | 0.38 | 0.47 | 0.41 | 0.55 | 0.41 | 0.41 | 0.47 | 0.29 | 0.17 | - |
Percent nucleotide divergence from NY99 and TM171-03 is indicated above the diagonal with amino acid divergence shown below the diagonal. Sequences with high nucleotide and/or amino acid similarity are annotated in bold.