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. 2014 Aug 4;111(33):12199–12204. doi: 10.1073/pnas.1411012111

Table 2.

Functional assignments of regions containing sites in DHMM states 2 and 3

State No. of regions Total length, bp Function (number)
2 14 7,300 Unknown (4), Regulatory (4), Antibiotic resistance (2), Carbon utilization (2), Virulence factor (2), Osmotic stress (2), Other stress (1)
2, 3 34 16,691 Osmotic stress (11), Unknown (9), Regulatory (9), Carbon utilization (3), Oxygen stress (3), Virulence factor (4), Antibiotic resistance (2), RNA degradation (1), Temperature stress (1), Other stress (1)
3 28 47 Unknown (7), Regulatory (6), Carbon utilization (5), Virulence factor (5), Temperature stress (3), Osmotic stress (2), Oxygen stress (2), Other stress (2), RNA degradation (1)
Total 76 24,038 Unknown (20), Regulatory (19), Osmotic stress (15), Virulence factor (11), Carbon utilization (10), Oxygen stress (5), Temperature stress (4), Other stress (4), Antibiotic resistance (4), RNA degradation (2)

Regions were counted once for each function they were assigned to, resulting in multiple counts for some regions. The individual genes and their putative functions within the 76 regions are listed in Dataset S1, tab 8.