Table 6. Information of candidate genes related to the markers associated with OC traits.
| Marker | Related genea | Annotation | Nearby lipid genesb | Arabidopsis thaliana homologous genes | Ref. | |
| Locic | Annotation | |||||
| Hs4381 | C01.460 | Thioredoxin M3 | C01.526 | At1G55260 | Lipid Transfer Protein type 5 | [25] |
| Hs02 | C01.560 | E3 ubiquitin-protei | C01.548 | At3G25110 | Acyl-ACP Thioesterase A | [26] |
| ligase RHF2A | C01.575 | At3G07400 | Lipid Acylhydrolase-like | |||
| C01.561 | Unknown | C01.601 | At2G30720 | Acyl-CoA Thioesterase | [27] | |
| Hs4082 | C01.882 | Cell cycle protein | C01.873 | At1G53390 | ABC Transporter | [28] |
| C01.883 | ABC transporter G | C01.883 | At2G28070 | ABC Transporter | [28] | |
| family member 3 | C01.928 | At3G44830 | Diacylglycerol Acyltransferase | [29] | ||
| Hs635 | C02.696 | RAS-related protein Rab11A | C02.739 | At1G47620 | Midchain Alkane Hydroxylase | 30] |
| Hs4209 | C04.25 | Transmembrane domain | C04.38 | At1G31770 | ABC Transporter | [31] |
| containing protein | C04.56 | At1G71010 | Phosphatidylinositol-Phosphate Kinase | [32] | ||
| C04.26 | TCP transcription factor 12 | C04.81 | At1G10900 | Phosphatidylinositol-Phosphate Kinase | [32] | |
| C04.96 | At1G77660 | Phosphatidylinositol-Phosphate Kinase | [32] | |||
| Hs4061 | C04.681 | Inositol trisphosphate 5-phosphatase 1 | — | |||
| Hs345 | C04.785 | Unknown | C04.767 | At1G05630 | Phosphoinositide 5-Phosphatase | — |
| C04.786 | Stearoyl-ACP desaturase | C04.786 | At2G43710 | Stearoyl-ACP Desaturase | [33] | |
| Hs1956 | C04.845 | FAR1-related sequence | The same as Hs345 | |||
| Hs393 | C13.438 | bZIP transcription | C13.388 | At1G10900 | Phosphatidylinositol-Phosphate Kinase | [32] |
| factor 40 | C13.471 | At5G10160 | Hydroxyacyl-ACP Dehydrase | [34] | ||
| C13.504 | At1G17840 | ABC Transporter | [35] | |||
| C13.514 | At4G36480 | Subunit of Serine Palmitoyltransferase | [36] | |||
| Hs205 | C14.21 | Thylakoid membrane | C14.49 | At4G33550 | Lipid Transfer Protein type 3 | [37] |
| phosphoprotein | C14.66 | At1G49430 | Long-Chain Acyl-CoA Synthetase | [38] | ||
| C14.22 | Serine/threonine-protein | C14.111 | At2G46210 | Sphingobase-D8 Desaturase | [39] | |
| kinase WNK4 | C14.132 | At2G46090 | Diacylglycerol Kinase | — | ||
| Hs672 | C14.367 | Cyclin-P3.1 F-box | C14.359 | At2G45150 | CDP-DAG Synthase | [40] |
| protein | C14.413 | At4G33355 | Lipid Transfer Protein type 1 | — | ||
| C14.368 | Unknown | C14.428 | At2G44810 | Acylhydrolase (DAD1-like) | — | |
| Y2129 | C15.825 | Unknown | C15.92 | At2G29980 | Linoleate Desaturase | [41] |
| Hs1638 | C15.840 | Unknown | The same as Y2129 | |||
| Hs618 | C25.41 | IAA-alanine resistance | C25.69 | At5G08415 | Lipoate Synthase | [42] |
| protein 1 | ||||||
| C25.42 | Beta-D-xylosidase | |||||
| Hs376 | C26.474 | ADP-ribosylation factor | C26.417 | At1G15110 | Base-Exchange-type Phosphatidylserine | [43] |
| Synthase | ||||||
| C26.454 | At1G71010 | Phosphatidylinositol-Phosphate Kinase | — | |||
| C26.515 | At1G31812 | Acyl CoA Binding Protein | [44] | |||
| Hs377 | C26.475 | Unknown | The same as Hs376 | |||
| Hs485 | sf00001.885 | Unknown | sf00001.95 | At4G04930 | Dihydrosphingosine Delta-4 Desaturase | [45] |
| sf00001.886 | Unknown | |||||
| Hs586 | sf00001.754 | ADP-ribosylation factor | — | |||
| Hs1036 | sf00044.12 | ABC transporter I | sf00044.12 | At3G20320 | Acid-Binding Protein | [46] |
| family member 15 | sf00044.41 | At2G25170 | Chromatin remodeling factor | [47] | ||
| sf00044.61 | At4G19860 | Acyl acceptor Acyltransferase | — | |||
| sf00044.90 | At1G13210 | Translocase | — | |||
| sf00044.113 | At1G74320 | Choline Kinase | [48] | |||
Note: aRelated genes are the genes containing or close to the screened markers.
b
Nearby lipid genes refer to the genes located in the upstream and downstream of 500 Kb far from the marker.
c
Only one of the homologous genes is listed in the table.
— refers to no known lipid genes in the location.