Table 1.

Comparisons of different local ancestry inference methods.

Method1	Input genotype	SNP density	Computing time (minutes)2	Number of ancestry segments		Correlation with admixture
				Mean	SD
LAMP	Unphased	Low	<1	6.00	1.78	0.920
LAMP-LD	Unphased	High	128	25.49	7.27	0.989
MULTIMIX	Unphased	High	20	22.40	17.5	0.923
MULTIMIX	Phased	High	20 + 5603	49.13	18.87	0.975

¹Only results from runs with window size of 100 are listed in Table 1.

²One hundred seven samples were tested on a PowerEdge M600 node 2.33 GHz with 16 GB RAM.

³Additional 560 minutes were used to resolve the boundaries.