Table 3.

Most significant variants in exome sequencing and GWAS

Rank

GWAS SNPs

Agilent

Illumina

NimbleGen

SNP

p Value

Function

SNP

p Value

Function

SNP

p Value

Function

SNP

p Value

Function

1

9:15472139

7.5E-07

Intronic

7:11022564

8.8E-07

Exonic

7:11022564

8.8E-07

Exonic

7:11022564

8.8E-07

Exonic

2

7:11022564

8.8E-07

Exonic

7:11022230

1.0E-06

Exonic

7:11022230

1.0E-06

Exonic

7:11022230

1.0E-06

Exonic

3

7:11008221

1.0E-06

Intergenic

9:15468480

4.4E-06

Intronic

7:94927677

2.9E-06

UTR3

9:15571630

3.2E-05

Exonic

4

7:11022230

1.0E-06

Exonic

7:41661724

2.9E-05

Intergenic

7:94921491

8.3E-06

UTR3

9:14863863

7.2E-05

Exonic

5

7:11015444

1.1E-06

Intronic

9:15571630

3.2E-05

Exonic

9:15571630

3.2E-05

Exonic

3:125859012

7.4E-05

Intronic

6

9:15528290

1.1E-06

Intergenic

3:184766392

3.9E-05

Intronic

3:184770380

3.9E-05

UTR3

17:64210580

7.5E-05

Exonic

7

9:15443430

1.4E-06

Intronic

3:184769911

4.5E-05

UTR3

3:184769911

4.5E-05

UTR3

7:44608718

7.9E-05

Intronic

8

9:15469733

1.7E-06

Intronic

3:184769941

4.5E-05

UTR3

3:184769941

4.5E-05

UTR3

1:212798260

1.0E-04

Exonic

9

3:106199956

2.2E-06

Intergenic

9:14863863

7.2E-05

Exonic

7:94921543

6.8E-05

UTR3

1:210761365

1.2E-04

Exonic

10

9:15446868

2.3E-06

Intronic

17:64210580

7.5E-05

Exonic

9:14863863

7.2E-05

Exonic

7:2414142

1.2E-04

Intronic