Skip to main content
. 2014 Aug 22;5:4684. doi: 10.1038/ncomms5684

Table 2. GWAS results.

  Discovery phase
Replication phase
Combined phase
Protein H* N SNPs P (best) % Var Expl H* N SNPs P (best) % Var Expl H* SNPs P (best) % Var Expl λ
IL-6RA 0.66 653 22 1.1 × 10−40 27.3 0.50 317 10 1.1 × 10−20 27.4 0.68 22 4.4 × 10−58 26.6 1.06
CXCL10 0.47 641 24 1.4 × 10−31 21.3 0.39 311 1 2.3 × 10−06 7.2 0.46 16 6.8 × 10−37 16.9 0.94
CCL24 0.71 653 17 2.3 × 10−28 18.7 0.79 317 4 5.3 × 10−11 13.6 0.78 30 2.0 × 10−36 16.4 1.09
MIC-A 0.40 363 25 2.1 × 10−17 19.8 0.54 174 14 3.7 × 10−04 7.3 0.52 19 5.3 × 10−16 12.2 1.25
CD40-L 0.27 640 14 1.3 × 10−16 10.7 0.39 315 13 2.1 × 10−10 12.8 0.33 22 1.1 × 10−25 11.5 1.13
CXCL5 0.41 653 8 7.7 × 10−16 9.9 0.62 317 5 1.5 × 10−10 12.9 0.51 8 4.3 × 10−26 11.5 1.06
hK11 0.33 628 5 3.7 × 10−15 9.8 0.08 310 5 4.3 × 10−04 3.4 0.24 15 5.3 × 10−18 7.9 0.98
Ep-CAM 0.54 653 18 2.1 × 10−14 5.2 0.50 317 8 1.4 × 10−09 11.6 0.57 24 6.7 × 10−16 6.7 0.97
IL-17RB 0.51 415 1 4.7 × 10−13 12.6 0.30 199 1 1.1 × 10−07 14.2 0.48 2 1.7 × 10−18 12.5 0.96
IL-12B 0.38 652 1 4.7 × 10−12 7.3 0.64 317 1 1.3 × 10−06 7.4 0.43 4 9.0 × 10−17 7.1 0.93
VEGF-D 0.29 652 21 8.7 × 10−10 5.8 0.39 317 21 6.9 × 10−08 8.8 0.36 36 1.1 × 10−15 6.6 1.01
E-selectin 0.44 639 4 8.9 × 10−10 5.7 0.70 306 4 1.3 × 10−08 10.6 0.56 6 5.0 × 10−16 7.0 1.01
MIA 0.25 648 4 1.6 × 10−09 5.6 0.55 316 4 2.0 × 10−09 11.4 0.37 7 6.8 × 10−17 7.2 1.05
MPO 0.43 646 1 3.8 × 10−09   0.22 317 0 9.0 × 10−01   0.39 0 6.1 × 10−07   1.05
CCL19 0.32 653 10 1.3 × 10−08 5.0 0.33 317 10 2.0 × 10−06 7.1 0.32 15 2.6 × 10−13 5.5 0.92

GWAS, genome-wide association study; SNP, single-nulecotide polymorphism; Var Expl, variance explained.

P-values were calculated from 1df Wald statistics χ2-values.

*Heritability estimate.

Fraction of variance explained in the adjusted and transformed phenotype by the top-ranking SNP (SNP with lowest P-value in the combined analysis).

Estimation of the inflation factor for the resulting distribution of P-values.