Skip to main content
. 2014 Aug 26;5:449. doi: 10.3389/fmicb.2014.00449

Table 1.

Degenerate primers used in the gene screening.

Gene Primer Sequence (5′ →3′) Degeneracy* (%) Conserved motif
argH argH-F AAYGAYCARRTNGCNACNGA 35 NDQ(V/I)ATD
argH-R TCNGGRTTYTTYTTYTGNGGCAT 26 MPQKKNPD
ilvD ilvD-F ATGTWYACVGCNAAYWCNATG 33 M(F/Y)TAN(S/T)M
ilvD-R GARAARAANCKVCCRTCNGT 35 SGGT(S/W)G
leuB leuB-F GGNGAYGGHATHGGBCCBGA 30 GDGIGPE
leuB-R TCVGAVARDATRTCGCCRAA 30 FGDILSD
metE metE-F AACTAYCACTAYMTVGTVCCNGA 26 NYHY(M/I/L)VPE
metE-R CCRCARTCHGGRTTNAYCCA 30 W(V/I)NPDCG
thrC thrC-F GCDACNTCNGGBGAYACNGG 30 ATSGDTG
thrC-R TYNCCRAARTTNCCNSWNGG 45 PSGNFG(D/N)
trpB trpB-F GTNHTNGGNCARGCNYTNYTNGC 43 V(L/I)GQALLA
trpB-R TCNCCNCGNCCNGANAGRTT 30 NLSGRGD
*

Primer degeneracy was measured as the proportion of ambiguous sites.