Table 1.
Gene | Primer | Sequence (5′ →3′) | Degeneracy* (%) | Conserved motif |
---|---|---|---|---|
argH | argH-F | AAYGAYCARRTNGCNACNGA | 35 | NDQ(V/I)ATD |
argH-R | TCNGGRTTYTTYTTYTGNGGCAT | 26 | MPQKKNPD | |
ilvD | ilvD-F | ATGTWYACVGCNAAYWCNATG | 33 | M(F/Y)TAN(S/T)M |
ilvD-R | GARAARAANCKVCCRTCNGT | 35 | SGGT(S/W)G | |
leuB | leuB-F | GGNGAYGGHATHGGBCCBGA | 30 | GDGIGPE |
leuB-R | TCVGAVARDATRTCGCCRAA | 30 | FGDILSD | |
metE | metE-F | AACTAYCACTAYMTVGTVCCNGA | 26 | NYHY(M/I/L)VPE |
metE-R | CCRCARTCHGGRTTNAYCCA | 30 | W(V/I)NPDCG | |
thrC | thrC-F | GCDACNTCNGGBGAYACNGG | 30 | ATSGDTG |
thrC-R | TYNCCRAARTTNCCNSWNGG | 45 | PSGNFG(D/N) | |
trpB | trpB-F | GTNHTNGGNCARGCNYTNYTNGC | 43 | V(L/I)GQALLA |
trpB-R | TCNCCNCGNCCNGANAGRTT | 30 | NLSGRGD |
Primer degeneracy was measured as the proportion of ambiguous sites.