Table 3.
Examples of developmental regulators that were identified by DGE to be differentially expressed in the spines of 1.6 and 0.5cm cucumber fruit
| Gene ID | Gene name | Fold change (1.6/0.5cm) | P value |
|---|---|---|---|
| Meristem maintenance | |||
| Csa7G041370 | STM (SHOOT MERISTEMLESS) | 37.8 | 3.4E–09 |
| Csa1G408710 | ZLL (ZWILLE) | 9.0 | 1.8E–03 |
| Csa1G025070 | PIN1 (PIN-FORMED 1) | 19.9 | 1.7E–08 |
| Csa6G139130 | LBD4 (LOB DOMAIN-CONTAINING PROTEIN 4) | 6.3 | 4.6E–03 |
| Csa4G103350 | DWF1 (DWARF 1) | 3.7 | 1.2E–03 |
| Csa5G608050 | NIK1 (NSP-INTERACTING KINASE 1) | 9.2 | 4.6E–06 |
| Csa6G109640 | SCL6 (scarecrow-like transcription factor 6) | 3.5 | 1.8E–03 |
| Csa5G642730 | NIK1 (NSP-INTERACTING KINASE 1) | 6.6 | 1.9E–06 |
| Csa5G092940 | BRL2 (BRI1-LIKE 2) | 149.6 | 1.7E–06 |
| Sequence-specific DNA-binding transcription factor activity | |||
| Csa4G046650 | MNP (MONOPOLE) | 119.1 | 9.9E–06 |
| Csa4G652000 | WRKY35 (WRKY DNA-binding protein 40) | 53.5 | 4.3E–10 |
| Csa1G505950 | Dof-type zinc finger domain-containing protein | 19.1 | 8.6E–09 |
| Csa2G356610 | WOX4 (WUSCHEL RELATED HOMEOBOX 4) | 157.2 | 1.0E–06 |
| Csa3G895630 | ATHB-8 (HOMEOBOX GENE 8) | 6.3 | 4.5E–07 |
| Csa6G081510 | SHR (SHORT ROOT) | 214.4 | 1.5E–07 |
| Csa6G135460 | APL (ALTERED PHLOEM DEVELOPMENT) | 214.4 | 4.6E–08 |
| Csa1G423190 | AIL5 (AINTEGUMENTA-LIKE 5) | 157.2 | 1.2E–06 |
| Csa2G035350 | MYB50 (MYB DOMAIN PROTEIN 50) | 286.7 | 6.2E–09 |
| Csa6G526230 | WRKY35 (WRKY DNA-binding protein 35) | 256.3 | 9.7E–08 |
| Csa6G426940 | YAB2 (YABBY2) | 3.7 | 6.7E–04 |
| Vascular patterning and polarity specification | |||
| Csa6G141360 | REV (REVOLUTA) | 4.7 | 1.4E–05 |
| Csa6G525430 | PHB (PHABULOSA) | 3.4 | 9.2E–04 |
| Csa3G194380 | KAN1 (KANADI1) | 3.0 | 1.8E–03 |
| Csa4G644740 | ANT (AINTEGUMENTA) | 8.2 | 4.5E–06 |
| Csa6G496390 | ANT (AINTEGUMENTA) | 4.0 | 1.2E–04 |
| Csa3G009500 | TRN2 (TORNADO 2) | 17.7 | 3.2E–06 |