Table II.

Tumor tissue eQTL analysis for significant association between GWAS SNPs and expression of genes within ±2 Mb

Locus	SNP	Gene symbol	Gene name	Tumor		Normal
				r*	P value	r $	P value
1q41	rs6687758	DUSP10	Dual specificity phosphatase 10	0.27	0.0083	0.13	0.12
6p21.2	rs1321311	SCUBE3	Signal peptide, CUB domain. EGF-like 3	−0.27	0.0071	0.07	0.43
11q13.4	rs3824999	SLCO2B1	Solute carrier organic anion transporter family, member 2B1	−0.27	0.0073	−0.01	0.94
11q13.4	rs3824999	SERPINH1	Serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1)	−0.29	0.0042	−0.05	0.53
11q23.1	rs3802842	TEX12	Testis expressed 12	−0.30	0.0031	0.24	0.0036
12q13.12	rs7136702	TUBA1C	Tubulin. Alpha 1c	0.29	0.0046	0.06	0.51
12q13.12	rs11169552	SMAGP	Small cell adhesion glycoprotein	−0.26	0.0088	−0.14	0.087
16q22.1	rs9929218	TSNAXIP1	Translin-associated factor X interacting protein 1	0.28	0.0055	−0.05	0.59
16q22.1	rs9929218	HSF4	Heat shock transcription factor 4	0.28	0.0067	0.05	0.54
16q22.1	rs9929218	NUTF2	Nuclear transport factor 2	0.32	0.0017	0.09	0.27
20p12.3	rs961253	GPCPD1	Glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)	−0.30	0.0032	0.03	0.73
20p12.3	rs961253	CRLS1	Cardiolipin synthase 1	−0.28	0.0062	0.08	0.34
20p12.3	rs961253	LINC00654	Long intergenic non-protein coding RNA 654	−0.29	0.0037	−0.03	0.75
20p12.3	rs961253	FERMT1	Fermitin family member 1	−0.26	0.0090	0.15	0.08
20p13.33	rs2423279	MCM8	Minichromosome maintenance complex component 8	−0.29	0.0038	−0.03	0.69
20p13.33	rs2423279	TRMT6	tRNA methyltransferase 6 homolog (S. cerevisiae)	−0.29	0.0043	−0.02	0.80

*Pearson correlation coefficient.

^$Pearson partial correlation coefficient.