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Precision and recall of compared methods on simulated reads from the UCSC annotated human transcripts. (a) Single-end reads with different lengths (100, 200, 300 bp). (b) Paired-end reads with different lengths (100, 125, 150, 175 bp). (c) Single-end reads with a fixed 150 bp length and an increasing amout of material (1, 5, 10 million)
