Table 2.

Running time and memory consumption for 454 (top) and IonTorrent (bottom) experiments

			Allpaths-LG		Coral		Coral*		Fiona		HybridShrec*		HybridShrecF
Dataset		Gbp	time	mem	time	mem	time	mem	time	mem	time	Mem	time	mem
D.melanogaster	18×	2.2	145.0	11	496.1	59	1414.1	60	240.7	18	333.2	41	499.5	42
E.coli K-12	13×	0.06	1.0	0	0.8	3	0.9	3	2.5	1	4.8	5	5.0	12
S.aureus	34×	0.1	3.0	1	5.5	5	112.2	5	12.3	1	12.0	14	13.6	15
S.cerevisae	16×	0.19	6.5	1	7.1	5	19.6	5	13.1	2	22.5	15	30.5	15
B.pertussis	85×	0.3	6.0	2	13.5	9	81.2	9	32.0	3	58.3	17	54.0	21
E.coli K-12	8×	0.04	2.6	0	3.4	3	4.4	3	3.1	1	7.1	5	9.2	8
E.coli K-12	163×	0.8	14.2	4	243.0	13	373.8	13	118.3	9	111.3	19	160.2	6
E.coli K-12	156×	0.7	15.0	7	249.1	12	290.1	12	49.2	8	111.4	18	111.0	6
E.coli O104:H4	32×	0.2	3.8	1	5.3	8	12.6	8	15.2	2	21.7	15	28.7	16
H.sapiensa	11×	31.5	572.8	129	—b		—b		1187.1	244	—b		—b
P.falciparum	13×	0.3	5.6	1	11.0	11	24.8	11	20.5	3	38.9	16	49.7	20
S.aureus	109×	0.31	4.4	1	12.0	13	175.8	13	43.7	3	51.1	18	53.8	29

Note: ^aThe programs were run on machine with 16 physical and 32 virtual cores and 370 GB of RAM. ^bOut of memory—Time (in minutes and fractions thereof) and memory (in GB, rounded to the next GB) for the read correction runs from Table 1. For each dataset, the results with the lowest running time and memory are given in bold. The results are separated by sequencing technology; the 454 results are above the IonTorrent results.