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. 2014 Aug 22;30(17):i572–i578. doi: 10.1093/bioinformatics/btu466

Table 2.

Performance of the method in discriminating tumor types

Tumor Q2 PPV TPR NPV TNR C AUC NG
COAD 0.98 0.97 0.99 0.99 0.97 0.96 0.99 107/128
LUAD 0.77 0.74 0.83 0.82 0.71 0.55 0.83 274/28
PRAD 0.84 0.78 0.95 0.94 0.72 0.69 0.89 59/199

Note: Q2, overall accuracy; PPV and NPV, positive and negative predicted values; TPR and TNR, true positive and negative rates; MCC, Matthew’s correlation; AUC, area under the (ROC) curve. NG is the number of top positive/ lowest negative genes with score higher than 3/ lower than −3.