TABLE 1.
Bacterial strains used in this study to validate specificity of each assaya
| Species | Strain | Origin | Host | Source | LAMP result |
|||
|---|---|---|---|---|---|---|---|---|
| X. oryzae pv. oryzicola | X. oryzae pv. oryzae | African lineage X. oryzae pv. oryzae | Asian lineage X. oryzae pv. oryzae | |||||
| X. oryzae pv. oryzae | R-3 | Australia | Oryza sativa | I. Buddenhagen | − | + | − | + |
| X. oryzae pv. oryzae | BAI3 | Burkina Faso | O. sativa | V. Verdier | − | + | + | − |
| X. oryzae pv. oryzae | BAI4 | Burkina Faso | Oryza glaberrima | V. Verdier | − | + | + | − |
| X. oryzae pv. oryzae | BAI1 | Burkina Faso | O. sativa | V. Verdier | − | + | + | − |
| X. oryzae pv. oryzae | BAI2 | Burkina Faso | O. sativa | V. Verdier | − | + | + | − |
| X. oryzae pv. oryzae | CFBP1948 | Cameroon | O. sativa | J. L. Notteghem | − | + | + | − |
| X. oryzae pv. oryzae | CFBP1952 | Mali | O. sativa | J. L. Notteghem | − | + | + | − |
| X. oryzae pv. oryzae | 94 (35) | China | O. sativa | − | + | − | + | |
| X. oryzae pv. oryzae | A3857 | India | O. sativa | J. E. Leach | − | + | − | + |
| X. oryzae pv. oryzae | IXO16 | Indonesia | O. sativa | − | + | − | + | |
| X. oryzae pv. oryzae | MAFF311018 | Japan | O. sativa | A. Bogdanove | − | + | − | + |
| X. oryzae pv. oryzae | KACC10331 | South Korea | O. sativa | − | + | − | + | |
| X. oryzae pv. oryzae | Xoo197 | South Korea | O. sativa | S. H. Choi | − | + | − | + |
| X. oryzae pv. oryzae | Xoo199 | South Korea | O. sativa | S. H. Choi | − | + | − | + |
| X. oryzae pv. oryzae | MXO90 | Malaysia | O. sativa | − | + | − | + | |
| X. oryzae pv. oryzae | MXO92 | Malaysia | O. sativa | − | + | − | + | |
| X. oryzae pv. oryzae | CFBP1949 | Mali | O. sativa | V. Verdier | − | + | + | − |
| X. oryzae pv. oryzae | CFBP1951 | Mali | O. sativa | V. Verdier | − | + | + | − |
| X. oryzae pv. oryzae | MAI1 | Mali | O. sativa | V. Verdier | − | + | + | − |
| X. oryzae pv. oryzae | MAI9 | Mali | O. sativa | V. Verdier | − | + | + | − |
| X. oryzae pv. oryzae | R-13 | Myanmar | O. sativa | I. Buddenhagen | − | + | − | + |
| X. oryzae pv. oryzae | NXO537 | Nepal | O. sativa | Tika Adhikari | − | + | − | + |
| X. oryzae pv. oryzae | NXO544 | Nepal | O. sativa | Tika Adhikari | − | + | − | + |
| X. oryzae pv. oryzae | NXO588 | Nepal | O. sativa | Tika Adhikari | − | + | − | + |
| X. oryzae pv. oryzae | NAI2 | Niger | O. sativa | V. Verdier | − | + | + | − |
| X. oryzae pv. oryzae | NAI5 | Niger | O. sativa | V. Verdier | − | + | + | − |
| X. oryzae pv. oryzae | NAI6 | Niger | O. sativa | V. Verdier | − | + | + | − |
| X. oryzae pv. oryzae | NAI7 | Niger | O. sativa | V. Verdier | − | + | + | − |
| X. oryzae pv. oryzae | NAI8 | Niger | O. sativa | V. Verdier | − | + | + | − |
| X. oryzae pv. oryzae | NAI9 | Niger | O. sativa | V. Verdier | − | + | + | − |
| X. oryzae pv. oryzae | PXO69 | Philippines | O. sativa | C. M. Vera Cruz | − | + | − | + |
| X. oryzae pv. oryzae | PXO99A | Philippines | O. sativa | A. Bogdanove | − | + | − | + |
| X. oryzae pv. oryzae | PXO86 | Philippines | O. sativa | C. M. Vera Cruz | − | + | − | + |
| X. oryzae pv. oryzae | PXO111 | Philippines | O. sativa | C. M. Vera Cruz | − | + | − | + |
| X. oryzae pv. oryzae | PXO121 | Philippines | O. sativa | C.M. Vera Cruz | − | + | − | + |
| X. oryzae pv. oryzae | PXO130 | Philippines | O. sativa | C. M. Vera Cruz | − | + | − | + |
| X. oryzae pv. oryzae | PXO132 | Philippines | O. sativa | C. M. Vera Cruz | − | + | − | + |
| X. oryzae pv. oryzae | PXO172 | Philippines | O. sativa | C. M. Vera Cruz | − | + | − | + |
| X. oryzae pv. oryzae | PXO183 | Philippines | O. sativa | C. M. Vera Cruz | − | + | − | + |
| X. oryzae pv. oryzae | PXO344 | Philippines | O. sativa | C. M. Vera Cruz | − | + | − | + |
| X. oryzae pv. oryzae | CL-1 | Sri Lanka | O. sativa | I. Buddenhagen | − | + | − | + |
| X. oryzae pv. oryzae | Xoo1 | Thailand | O. sativa | J. E. Leach | − | + | − | + |
| X. oryzae pv. oryzae | Xoo3 | Thailand | O. sativa | J. E. Leach | − | + | − | + |
| X. oryzae pv. oryzae | RS61 | China | O. sativa | J. S. Wang | − | + | − | + |
| X. oryzae pv. oryzicola | RS85 | China | O. sativa | J. S. Wang | + | − | − | x |
| X. oryzae pv. oryzicola | CFBP2286 | Malaysia | O. sativa | V. Verdier | + | − | − | − |
| X. oryzae pv. oryzicola | MAI4 | Mali | O. sativa | V. Verdier | + | − | − | − |
| X. oryzae pv. oryzicola | MAI5 | Mali | O. sativa | V. Verdier | + | − | − | − |
| X. oryzae pv. oryzicola | MAI6 | Mali | O. sativa | V. Verdier | + | − | − | − |
| X. oryzae pv. oryzicola | MAI7 | Mali | O. sativa | V. Verdier | + | − | − | − |
| X. oryzae pv. oryzicola | MAI8 | Mali | O. sativa | V. Verdier | + | − | − | − |
| X. oryzae pv. oryzicola | MAI10 | Mali | O. sativa | V. Verdier | + | − | + | − |
| X. oryzae pv. oryzicola | BLS46 | Philippines | O. sativa | C. M. Vera Cruz | + | − | − | x |
| X. oryzae pv. oryzicola | BLS96 | Philippines | O. sativa | C. M. Vera Cruz | + | − | − | x |
| X. oryzae pv. oryzicola | BLS98 | Philippines | O. sativa | C. M. Vera Cruz | + | − | − | − |
| X. oryzae pv. oryzicola | BLS105 | Philippines | O. sativa | C. M. Vera Cruz | + | − | x | − |
| X. oryzae pv. oryzicola | BLS106 | Philippines | O. sativa | C. M. Vera Cruz | + | − | x | x |
| X. oryzae pv. oryzicola | BLS111 | Philippines | O. sativa | C. M. Vera Cruz | + | − | − | x |
| X. oryzae pv. oryzicola | BLS114 | Philippines | O. sativa | C. M. Vera Cruz | + | − | x | − |
| X. oryzae pv. oryzicola | BLS123 | Philippines | O. sativa | C. M. Vera Cruz | + | − | − | x |
| X. oryzae pv. oryzicola | BLS125 | Philippines | O. sativa | C. M. Vera Cruz | + | − | x | − |
| X. oryzae pv. oryzicola | BLS170 | Philippines | O. sativa | C. M. Vera Cruz | + | − | x | x |
| X. oryzae pv. oryzicola | BLS175 | Philippines | O. sativa | C. M. Vera Cruz | + | − | − | x |
| X. oryzae pv. oryzicola | BLS179 | Philippines | O. sativa | C. M. Vera Cruz | + | − | x | − |
| X. oryzae pv. oryzicola | BLS220 | Philippines | O. sativa | C. M. Vera Cruz | + | − | x | x |
| X. oryzae pv. oryzicola | BLS256 | Philippines | O. sativa | A. Bogdanove | + | − | − | x |
| X. oryzae pv. oryzicola | BLS276 | Philippines | O. sativa | C. M. Vera Cruz | + | − | x | − |
| X. oryzae pv. oryzicola | BLS281 | Philippines | O. sativa | C. M. Vera Cruz | + | − | x | x |
| X. oryzae pv. oryzicola | BLS291 | Philippines | O. sativa | C. M. Vera Cruz | + | − | x | x |
| X. oryzae pv. oryzicola | BLS294 | Philippines | O. sativa | C. M. Vera Cruz | + | − | x | x |
| X. oryzae pv. oryzicola | BLS333 | Philippines | O. sativa | C. M. Vera Cruz | + | − | − | x |
| X. oryzae pv. oryzicola | BLS346 | Philippines | O. sativa | C. M. Vera Cruz | + | − | x | − |
| X. oryzae pv. oryzicola | BLS354 | Philippines | O. sativa | C. M. Vera Cruz | + | − | x | x |
| X. oryzae pv. oryzicola | BLS356 | Philippines | O. sativa | C. M. Vera Cruz | + | − | − | x |
| X. oryzae pv. oryzicola | BLS377 | Philippines | O. sativa | C. M. Vera Cruz | + | − | − | − |
| X. oryzae pv. oryzicola | BLS404 | Philippines | O. sativa | C. M. Vera Cruz | + | − | x | − |
| X. oryzae pv. oryzicola | BLS413 | Philippines | O. sativa | C. M. Vera Cruz | + | − | x | x |
| X. oryzae pv. oryzicola | BLS415 | Philippines | O. sativa | C. M. Vera Cruz | + | − | − | x |
| X. oryzae pv. oryzicola | BLS417 | Philippines | O. sativa | C. M. Vera Cruz | + | − | − | − |
| X. oryzae pv. oryzicola | BLS420 | Philippines | O. sativa | C. M. Vera Cruz | + | − | − | − |
| X. oryzae pv. oryzicola | BLS421 | Philippines | O. sativa | C. M. Vera Cruz | + | − | x | x |
| X. oryzae pv. oryzicola | BLS468 | Philippines | O. sativa | C. M. Vera Cruz | + | − | − | x |
| X. oryzae | X1-8 | USA | O. sativa | C. Gonzalez | − | + | − | − |
| X. oryzae | X8-1A | USA | O. sativa | C. Gonzalez | − | + | − | − |
| X. oryzae | X211-2 | USA | O. sativa | C. Gonzalez | − | + | − | − |
| X. oryzae | X4-2C | USA | O. sativa | C. Gonzalez | − | + | − | − |
| X. oryzae | RU87-17 | USA | O. sativa | C. Gonzalez | − | + | − | − |
| X. oryzae | X11-5A | USA | O. sativa | C. Gonzalez | − | + | − | − |
| X. oryzae | X1-10 | USA | O. sativa | C. Gonzalez | − | + | − | − |
| Xanthomonas sp. | 97 M | Philippines | O. sativa | V. Verdier | − | − | − | − |
| Xanthomonas sp. | M136 | Mali | O. sativa | V. Verdier | − | − | − | − |
| Xanthomonas sp. | SHU36 | Philippines | O. sativa, seed | C. M. Vera Cruz | − | − | − | − |
| Xanthomonas sp. | SHU50 | Philippines | O. sativa, seed | C. M. Vera Cruz | − | − | − | − |
| Xanthomonas sp. | SHU100 | Philippines | O. sativa, seed | C. M. Vera Cruz | − | − | − | − |
| Xanthomonas sp. | SHU147 | Philippines | O. sativa, seed | C. M. Vera Cruz | − | − | − | − |
| Xanthomonas sp. | SHU178 | Philippines | O. sativa, seed | C. M. Vera Cruz | − | − | − | − |
| Xanthomonas sp. | SHU199 | Philippines | O. sativa, seed | C. M. Vera Cruz | − | − | x | x |
| Xanthomonas sp. | SHU202 | Philippines | O. sativa, seed | C. M. Vera Cruz | − | − | − | − |
| Xanthomonas sp. | SHU222 | Philippines | O. sativa, seed | C. M. Vera Cruz | − | − | − | − |
| Xanthomonas sp. | SHU268 | Philippines | O. sativa, seed | C. M. Vera Cruz | − | − | − | − |
| Xanthomonas sp. | SHU303 | Philippines | O. sativa, seed | C. M. Vera Cruz | − | − | x | − |
| Acidovorax avenae pv. avenae | NCPPB3112 | Brazil | Canna indica | NCPPB | − | − | − | x |
| A. avenae | BPJ4821 | Philippines | O. sativa | C. M. Vera Cruz | − | − | x | x |
| A. avenae pv. citrulli | 94-21 | USA | Citrullus lanatus | R. Walcott | − | − | − | − |
| Burkholderia andropogonis | 3549 | USA | Saccharum officinarum | L. E. Claflin | − | − | − | − |
| Burkholderia gladioli | O187 | USA | Allium cepa | H. F. Schwartz | − | − | − | − |
| Curtobacterium flaccumfaciens | B473 | USA | Phaseolous sp. | H. F. Schwartz | − | − | − | − |
| Escherichia coli | DH5α | USA | NA | Life Technologies | − | − | − | − |
| Enterobacter sp. | O121 | USA | Allium cepa | H. F. Schwartz | − | − | − | − |
| Enterobacter sp. | O174 | USA | Allium cepa | H. F. Schwartz | − | − | − | − |
| Pseudomonas marginalis | ATCC 10844 | USA | Lactuca sativa | H. F. Schwartz | − | − | − | − |
| Pseudomonas syringae pv. syringae | M72 | USA | Capsicum annuum | H. F. Schwartz | − | − | − | − |
| P. syringae pv. syringae | M108 | USA | Solanum lycopersicum | H. F. Schwartz | − | − | x | − |
| Pseudomonas viridiflava | ATCC 13223 | USA | Phaseolus coccineus | H. F. Schwartz | − | − | x | − |
| Ralstonia solanacearum | K60 | USA | S. lycopersicum | J. E. Leach | − | − | − | x |
| Xanthomonas axonopodis pv. vesicatoria | 85-10 | USA | Capsicum sp. | A. Bogdanove | − | − | x | − |
| X. axonopodis pv. sojense | 4455 | USA | Glycine max | L. E. Claflin | − | − | − | x |
| Xanthomonas campestris pv. campestris | X1910 | USA | Brassica oleracea | N. Dunlop | − | − | x | − |
| X. campestris pv. carotae | NCPPB1422 | New Zealand | Daucus carota | L. E. Claflin | − | − | − | x |
| Xanthomonas translucens pv. cerealis | NCPPB1836 | USA | Secale cereale | L. E. Claflin | − | − | − | − |
| Unknown | Ven | Venezuela | O. sativa, seed | V. Verdier | − | − | − | − |
a
+, positive amplification; −, absence of amplification; x, strain not tested; NCPPB, National Collection of Plant Pathogenic Bacteria; NA, not applicable.