Table 1.

Statistics of sequencing reads and alignment to the reference genome

Samples	Raw data reads	Raw data base (bp)	High-quality reads	High-quality base (bp)	Percentage of alignment (%)
S0	37,061,382	3,706,138,200	28,008,690	2,357,352,788	91.84
S6	24,715,554	2,471,555,400	18,742,423	1,581,929,269	91.38
S48	32,339,240	3,233,924,000	24,661,359	2,081,307,813	90.48
R0	39,251,668	3,925,166,800	29,661,746	2,489,101,005	92.15
R6	35,214,634	3,521,463,400	26,576,329	2,234,567,794	91.39
R48	29,490,134	2,949,013,400	22,533,122	1,903,312,211	91.84
all	198,072,612	19,807,261,200	150,183,669	12,647,570,880	-

Percentage of alignment = high quality reads aligned to genome/high-quality reads.