Table 2.
Frequency of micSeqs from validation samples
micSeqID | Freq from validation data of Europe samples | Freq from validation data of Asian samples | Freq from validation data of Africa samples | P-value for African vsnon-African |
---|---|---|---|---|
micSeq11220 | 0.46 | 0.54 | 0.63 | 0.33 |
micSeq13298 | 0.11 | 0.08 | 0.29 | 0.043 |
micSeq16601 | 0.07 | 0 | 0.13 | 0.31 |
micSeq18764 | 0.11 | 0.08 | 0.38 | 0.0021 |
micSeq11710 | 0 | 0.25 | 0.33 | 0.0030 |
micSeq143 | 0 | 0.92 | 0.33 | 0.61 |
micSeq1824 | 0.14 | 0.29 | 0.13 | 0.53 |
micSeq2373 | 0 | 0.08 | 0.33 | 0.0010 |
micSeq2382 | 0.32 | 0.42 | 0.50 | 0.31 |
micSeq30 | 0.25 | 0.04 | 0.79 | 0 |
micSeq71 | 0.29 | 0.29 | 0.58 | 0.022 |
micSeq634 | 0.14 | 0 | 0 | 0.30 |
micSeq9196 | 0.29 | 0.29 | 0.92 | 0 |
micSeq349 | 0 | 0.58 | 0.75 | 0.00013 |
micSeq28 | 0.54 | 0.13 | 0.67 | 0.013 |
The sample sizes are 14 for the European group, 12 for the African group, and 12 for the Asian group. For each micSeq, frequency in italic font indicates the maximum frequency. 12 out of 15 micSeqs show higher frequency in the African population than the other populations; 9 of them are statistically significant at the 5% level as indicated by bold font.