Table 1. Classification and general features of Clostridium jeddahense strain JCDT according to the MIGS recommendations [39].
MIGS ID | Property | Term | Evidence codea |
---|---|---|---|
Current classification | Domain Bacteria | TAS [40] | |
Phylum Firmicutes | TAS [41-43] | ||
Class Clostridia | TAS [44,45] | ||
Order Clostridiales | TAS [46,47] | ||
Family Clostridiaceae | TAS [46,48] | ||
Genus Clostridium | IDA [46,49,50] | ||
Species Clostridium jeddahense | IDA | ||
Type strain JCDT | IDA | ||
Gram stain | Positive | IDA | |
Cell shape | Rod | IDA | |
Motility | Motile | IDA | |
Sporulation | Sporulating | IDA | |
Temperature range | Mesophile | IDA | |
Optimum temperature | 37°C | IDA | |
MIGS-6.3 | Salinity | Unknown | IDA |
MIGS-22 | Oxygen requirement | Anaerobic | IDA |
Carbon source | Unknown | IDA | |
Energy source | Unknown | IDA | |
MIGS-6 | Habitat | Human gut | IDA |
MIGS-15 | Biotic relationship | Free living | IDA |
MIGS-14 | Pathogenicity Biosafety level Isolation |
Unknown 2 Human feces |
|
MIGS-4 | Geographic location | Jeddah, Saudi Arabia | IDA |
MIGS-5 | Sample collection time | July 2013 | IDA |
MIGS-4.1 | Latitude | 21.422487 | IDA |
MIGS-4.1 | Longitude | 39.856184 | IDA |
MIGS-4.3 | Depth | Surface | IDA |
MIGS-4.4 | Altitude | 0 m above sea level | IDA |
Evidence codes - IDA: Inferred from Direct Assay; TAS: Traceable Author Statement (i.e., a direct report exists in the literature); NAS: Non-traceable Author Statement (i.e., not directly observed for the living, isolated sample, but based on a generally accepted property for the species, or anecdotal evidence). These evidence codes are from the Gene Ontology project [51]. If the evidence is IDA, then the property was directly observed for a live isolate by one of the authors or an expert mentioned in the acknowledgements.