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. Author manuscript; available in PMC: 2015 Jan 1.
Published in final edited form as: J Virol Methods. 2013 Oct 4;195:26–33. doi: 10.1016/j.jviromet.2013.09.005

Table 2.

A Sequence-specific RACE primers for influenza A/New York/312/2001 (H1N1) virus.

Gene A/New York/312/2001 (H1N1)
PB2 5′-RACE: 5′-GCGAGATTGTGACATCAGATTCCTT-3′
3′-RACE: 5′-GACTCTAGCATACTTACTGACAGCCA-3′
PB1 5′-RACE: 5′-CTTATAGCATTTTGTGCTGGCACTTTT-3′
3′-RACE: 5′-ATAAAGACCTGCTCCACCATTGAA-3′
PA 5′-RACE: 5′-CCTCTCCATACTCTTTCATTGCCTTTT-3′
3′-RACE: 5′-CTAACACATGCATTGAGATAGTTA-3′
HA 5′-RACE: 5′-TTGAGTTGTTGGCATGGTAGCCTATAC-3′
3′-RACE: 5′-CAGCTTCTGGATGTGTTCCAATGG-3′
NP 5′-RACE: 5′-AGTCTCCATCTGTTCGTAAGACCGTTT-3′
3′-RACE: 5′-GCTCTCGGACGAAAGGGCAACGAA-3′
NA 5′-RACE: 5′-GGATTGAGTGACTAGCCCATATTGAAA-3′
3′-RACE: 5′-CTGGTCTTGGCCAGACGGTGCTGA-3′
M 5′-RACE: 5′-AGACATCTTCAAGTCTCTGTGCGATCT-3′
3′-RACE: 5′-GTACCAGAGTCTATGAGGGAAGAA-3′
NS 5′-RACE: 5′-AGGAAGCAATCTACCTGAAAGCTTGAC-3′
3′-RACE: 5′-CATTTATGCAAGCATTACAGCTAT-3′

B Sequence-specific RACE primers for influenza A/California/04/2009 (H1N1) virus.

Gene A/California/04/2009(H1N1)

PB2 5′-RACE: 5′-TCGCGAGTGCGGGACTGCGACATT-3′
3′-RACE: 5′-TCTAGCATAC1TACTGACAGCCAGA-3′
PB1 5′-RACE: 5′-GCTTATGGCATiTTGCGCTGGAA-3′
3′-RACE: 5′-CATGAAGATCTG1TCCACCA1TGA-3′
HA 5′-RACE: 5′-GTGTCTGCAT1TGCGG1TGCAA-3′
3′-RACE: 5′-GGATGTGCTCTAATGGGTCTCTA-3′
NP 5′-RACE: 5′-ACCAGTCTCCAT1TGTTCATATGATCG1T-3′
3′-RACE: 5′-GACATGAGTAATGAAGGGTC1TA-3′