Table 1.
ENTREZ GENE ID | GENE SYMBOL | GENE NAME | PrLD |
---|---|---|---|
10189 | ALYREF | Aly/REF export factor | |
1153 | CIRBP | cold inducible RNA binding protein | |
11052 | CPSF6 | cleavage and polyadenylation specific factor 6, 68kDa | |
79869 | CPSF7 | cleavage and polyadenylation specific factor 7, 59kDa | |
26528 | DAZAP1 | DAZ associated protein 1 | yes |
8662 | EIF3B | eukaryotic translation initiation factor 3, subunit B | |
8666 | EIF3G | eukaryotic translation initiation factor 3, subunit G | |
1975 | EIF4B | eukaryotic translation initiation factor 4B | |
7458 | EIF4H | eukaryotic translation initiation factor 4H | |
2130 | EWSR1 | Ewing sarcoma breakpoint region 1 | yes |
2521 | FUS | fusion (involved in t(12;16) in malignant liposarcoma) | yes |
10146 | G3BP1 | GTPase activating protein (SH3 domain) binding protein 1 | |
9908 | G3BP2 | GTPase activating protein (SH3 domain) binding protein 2 | |
2926 | GRSF1 | G-rich RNA sequence binding factor 1 | |
10949 | HNRNPA0 | heterogeneous nuclear ribonucleoprotein A0 | yes |
3178 | HNRNPA1 | heterogeneous nuclear ribonucleoprotein A1 | yes |
3181 | HNRNPA2B1 | heterogeneous nuclear ribonucleoprotein A2/B1 | yes |
220988 | HNRNPA3 | heterogeneous nuclear ribonucleoprotein A3 | yes |
3182 | HNRNPAB | heterogeneous nuclear ribonucleoprotein A/B | yes |
3183 | HNRNPC | heterogeneous nuclear ribonucleoprotein C (C1/C2) | |
3184 | HNRNPD | heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa) | yes |
3185 | HNRNPF | heterogeneous nuclear ribonucleoprotein F | |
3187 | HNRNPH1 | heterogeneous nuclear ribonucleoprotein H1 (H) | yes |
3188 | HNRNPH2 | heterogeneous nuclear ribonucleoprotein H2 (H’) | yes |
3189 | HNRNPH3 | heterogeneous nuclear ribonucleoprotein H3 (2H9) | yes |
3191 | HNRNPL | heterogeneous nuclear ribonucleoprotein L | |
4670 | HNRNPM | heterogeneous nuclear ribonucleoprotein M | |
10236 | HNRNPR | heterogeneous nuclear ribonucleoprotein R | |
9987 | HNRPDL | heterogeneous nuclear ribonucleoprotein D-like | yes |
10642 | IGF2BP1 | insulin-like growth factor 2 mRNA binding protein 1 | |
9782 | MATR3 | matrin 3 | |
4691 | NCL | nucleolin | |
7936 | NELFE | negative elongation factor complex member E | |
4841 | NONO | non-POU domain containing, octamer-binding | |
26986 | PABPC1 | poly(A) binding protein, cytoplasmic 1 | |
8761 | PABPC4 | poly(A) binding protein, cytoplasmic 4 (inducible form) | |
84271 | POLDIP3 | polymerase (DNA-directed), delta interacting protein 3 | |
55269 | PSPC1 | paraspeckle component 1 | yes |
125950 | RAVER1 | ribonucleoprotein, PTB-binding 1 | |
8241 | RBM10 | RNA binding motif protein 10 | |
10432 | RBM14 | RNA binding motif protein 14 | yes |
84991 | RBM17 | RNA binding motif protein 17 | |
55696 | RBM22 | RNA binding motif protein 22 | |
5935 | RBM3 | RNA binding motif (RNP1, RRM) protein 3 | |
9584 | RBM39 | RNA binding motif protein 39 | |
9939 | RBM8a | RNA binding motif protein 8A | |
27316 | RBMX | RNA binding motif protein, X-linked | |
6294 | SAFB | scaffold attachment factor B | |
57466 | SCAF4 | SR-related CTD-associated factor 4 | |
6421 | SFPQ | splicing factor proline/glutamine-rich (polypyrimidine tract binding protein associated) | yes |
6431 | SFRS6 | serine/arginine-rich splicing factor 6 | |
81892 | SLIRP | SRA stem-loop interacting RNA binding protein | |
6426 | SRSF1 | serine/arginine-rich splicing factor 1 | |
10772 | SRSF10 | serine/arginine-rich splicing factor 10 | |
6427 | SRSF2 | serine/arginine-rich splicing factor 2 | |
6428 | SRSF3 | serine/arginine-rich splicing factor 3 | |
6430 | SRSF5 | serine/arginine-rich splicing factor 5 | |
6432 | SRSF7 | serine/arginine-rich splicing factor 7 | |
8683 | SRSF9 | serine/arginine-rich splicing factor 9 | |
6741 | SSB | Sjogren syndrome antigen B (autoantigen La) | |
10492 | SYNCRIP | synaptotagmin binding, cytoplasmic RNA interacting protein | |
8148 | TAF15 | TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa | yes |
7307 | U2AF1 | U2 small nuclear RNA auxiliary factor 1 | |
113 3 8 | U2AF2 | U2 small nuclear RNA auxiliary factor 2 |
Notes: The set of 353 C9orf72 hexanucleotide repeat RNA-binding proteins are collected from two published datasets.13,23 Among them, the genes encoding 65 proteins with RRM motifs are listed with Entrez Gene ID, Gene Symbol, Gene Name, and the presence of prion-like domains (PrLD). The entire list is shown in Supplementary Table 1.