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. 2014 Aug 24;6:69–78. doi: 10.4137/JCNSD.S18103

Table 1.

The set of 65 C9orf72 hexanucleoride repeat RNA-binding proteins with RRM motifs.

ENTREZ GENE ID GENE SYMBOL GENE NAME PrLD
10189 ALYREF Aly/REF export factor
1153 CIRBP cold inducible RNA binding protein
11052 CPSF6 cleavage and polyadenylation specific factor 6, 68kDa
79869 CPSF7 cleavage and polyadenylation specific factor 7, 59kDa
26528 DAZAP1 DAZ associated protein 1 yes
8662 EIF3B eukaryotic translation initiation factor 3, subunit B
8666 EIF3G eukaryotic translation initiation factor 3, subunit G
1975 EIF4B eukaryotic translation initiation factor 4B
7458 EIF4H eukaryotic translation initiation factor 4H
2130 EWSR1 Ewing sarcoma breakpoint region 1 yes
2521 FUS fusion (involved in t(12;16) in malignant liposarcoma) yes
10146 G3BP1 GTPase activating protein (SH3 domain) binding protein 1
9908 G3BP2 GTPase activating protein (SH3 domain) binding protein 2
2926 GRSF1 G-rich RNA sequence binding factor 1
10949 HNRNPA0 heterogeneous nuclear ribonucleoprotein A0 yes
3178 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 yes
3181 HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 yes
220988 HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 yes
3182 HNRNPAB heterogeneous nuclear ribonucleoprotein A/B yes
3183 HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2)
3184 HNRNPD heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa) yes
3185 HNRNPF heterogeneous nuclear ribonucleoprotein F
3187 HNRNPH1 heterogeneous nuclear ribonucleoprotein H1 (H) yes
3188 HNRNPH2 heterogeneous nuclear ribonucleoprotein H2 (H’) yes
3189 HNRNPH3 heterogeneous nuclear ribonucleoprotein H3 (2H9) yes
3191 HNRNPL heterogeneous nuclear ribonucleoprotein L
4670 HNRNPM heterogeneous nuclear ribonucleoprotein M
10236 HNRNPR heterogeneous nuclear ribonucleoprotein R
9987 HNRPDL heterogeneous nuclear ribonucleoprotein D-like yes
10642 IGF2BP1 insulin-like growth factor 2 mRNA binding protein 1
9782 MATR3 matrin 3
4691 NCL nucleolin
7936 NELFE negative elongation factor complex member E
4841 NONO non-POU domain containing, octamer-binding
26986 PABPC1 poly(A) binding protein, cytoplasmic 1
8761 PABPC4 poly(A) binding protein, cytoplasmic 4 (inducible form)
84271 POLDIP3 polymerase (DNA-directed), delta interacting protein 3
55269 PSPC1 paraspeckle component 1 yes
125950 RAVER1 ribonucleoprotein, PTB-binding 1
8241 RBM10 RNA binding motif protein 10
10432 RBM14 RNA binding motif protein 14 yes
84991 RBM17 RNA binding motif protein 17
55696 RBM22 RNA binding motif protein 22
5935 RBM3 RNA binding motif (RNP1, RRM) protein 3
9584 RBM39 RNA binding motif protein 39
9939 RBM8a RNA binding motif protein 8A
27316 RBMX RNA binding motif protein, X-linked
6294 SAFB scaffold attachment factor B
57466 SCAF4 SR-related CTD-associated factor 4
6421 SFPQ splicing factor proline/glutamine-rich (polypyrimidine tract binding protein associated) yes
6431 SFRS6 serine/arginine-rich splicing factor 6
81892 SLIRP SRA stem-loop interacting RNA binding protein
6426 SRSF1 serine/arginine-rich splicing factor 1
10772 SRSF10 serine/arginine-rich splicing factor 10
6427 SRSF2 serine/arginine-rich splicing factor 2
6428 SRSF3 serine/arginine-rich splicing factor 3
6430 SRSF5 serine/arginine-rich splicing factor 5
6432 SRSF7 serine/arginine-rich splicing factor 7
8683 SRSF9 serine/arginine-rich splicing factor 9
6741 SSB Sjogren syndrome antigen B (autoantigen La)
10492 SYNCRIP synaptotagmin binding, cytoplasmic RNA interacting protein
8148 TAF15 TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa yes
7307 U2AF1 U2 small nuclear RNA auxiliary factor 1
113 3 8 U2AF2 U2 small nuclear RNA auxiliary factor 2

Notes: The set of 353 C9orf72 hexanucleotide repeat RNA-binding proteins are collected from two published datasets.13,23 Among them, the genes encoding 65 proteins with RRM motifs are listed with Entrez Gene ID, Gene Symbol, Gene Name, and the presence of prion-like domains (PrLD). The entire list is shown in Supplementary Table 1.