Table 2.
29 candidate feature genes selected by CII, IGI and relief algorithm.
| ACCESSION# | GENE | CHANGE | THRESHOLDa | SENSITIVITY | SPECIFICITY | RANGE[LOG(FC)] |
|---|---|---|---|---|---|---|
| NM_005327 | HADHSC | down | 0.763 | 100% | 100% | 7.792 |
| NM_000089 | COL1A2 | up | 2.394 | 100% | 100% | 4.359 |
| NM_001275 | CHGA | down | 0.317 | 95% | 100% | 4.491 |
| NM_019891 | ERO1LB | down | 0.626 | 100% | 94.7% | 5.648 |
| BC014245 | CTHRC1 | up | 2.112 | 95% | 95% | 4.343 |
| AK056767 | MAFK | down | 0.395 | 90% | 100% | 3.979 |
| NM_012277 | NM_012277 | down | 0.307 | 90% | 100% | 10.753 |
| AB033025 | KIAA1199 | up | 2.073 | 95% | 94.7% | 7.681 |
| NM_003247 | THBS2 | up | 2.570 | 100% | 85% | 3.819 |
| NM_002371 | MAL | down | 0.187 | 85% | 100% | 6.361 |
| NM_005672 | PSCA | down | 0.531 | 95% | 90% | 5.366 |
| NM_002909 | REG1A | down | 0.314 | 85% | 100% | 5.257 |
| NM_032744 | C6orf105 | down | 1.064 | 100% | 85% | 4.513 |
| NM_144646 | IGJ | down | 0.486 | 95% | 90% | 3.916 |
| AL117382 | C20orf142 | down | 0.369 | 85% | 100% | 4.559 |
| NM_020707 | C3orf3 | down | 0.640 | 85% | 100% | 4.774 |
| NM_003652 | CPZ | up | 3.155 | 85% | 100% | 11.824 |
| NM_000705 | ATP4B | down | 0.169 | 95% | 89.5% | 10.026 |
| NM_005136 | NM_005136 | down | 0.287 | 80% | 100% | 7.089 |
| NM_005145 | NM_005145 | down | 0.514 | 80% | 100% | 6.53 |
| BC015417 | MAMDC2 | down | 0.503 | 80% | 100% | 9.76 |
| BC003517 | ATXN7L1 | down | 0.755 | 80% | 100% | 10.797 |
| NM_007193 | ANXA10 | down | 0.149 | 75% | 100% | 6.131 |
| NM_003657 | BCAS1 | down | 0.301 | 75% | 100% | 4.044 |
| NM_018658 | KCNJ16 | down | 1.765 | 100% | 75% | 9.853 |
| NM_022129 | MAWBP | down | 0.558 | 75% | 100% | 4.693 |
| NM_032471 | PKIB | down | 0.617 | 100% | 75% | 9.477 |
| AA513382 | IGJ | down | 0.379 | 80% | 94.7% | 3.755 |
| NM_001854 | COL11A1 | up | 4.397 | 70% | 100% | 7.699 |
Note:
a
The threshold producing the sensitivity and specificity is selected to minimize the GINI index of the daughter nodes.