Table 3. Properties of the largest weakly connected differential subnetworks for all cell types.
Lung | B | |||||||
Properties | I/A | I/H | N/D | N/F | N/L | M/D | M/F | M/L |
Nodes | 506 | 667 | 684 | 511 | 841 | 621 | 457 | 742 |
Edges | 846 | 1227 | 2855 | 1717 | 3962 | 2525 | 1501 | 3401 |
Sources and effective sources | 30 | 34 | 12 | 11 | 9 | 9 | 9 | 12 |
Sinks and effective sinks | 450 | 598 | 286 | 198 | 369 | 275 | 204 | 333 |
Av. outdegree | 1.67 | 1.84 | 4.17 | 3.36 | 4.71 | 4.07 | 3.28 | 4.58 |
Max outdegree | 52 | 51 | 155 | 143 | 336 | 138 | 132 | 292 |
Max indegree | 8 | 10 | 40 | 29 | 49 | 35 | 27 | 44 |
Self-loops | 27 | 31 | 0 | 0 | 0 | 0 | 0 | 0 |
Undirected edges | 0 | 4 | 1238 | 738 | 1468 | 1000 | 596 | 1214 |
Diameter | 9 | 9 | 12 | 15 | 12 | 13 | 14 | 12 |
Max cycle cluster size | 6 | 3 | 351 | 280 | 397 | 305 | 199 | 337 |
Av. clustering coeff | 0.0348 | 0.0421 | 0.1878 | 0.1973 | 0.2446 | 0.1751 | 0.1935 | 0.2389 |
I = IMR-90 (normal), A = A549 (cancer), H = NCI-H358 (cancer), N = Naïve (normal), M = Memory (normal), D = DLBCL (cancer), F = Follicular lymphoma (cancer), L = EBV-immortalized lymphoblastoma (cancer).