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. 2014 Aug 29;9(8):e106115. doi: 10.1371/journal.pone.0106115

Figure 2. hrp promoter sequence alignment.

Figure 2

(A). Motif logo for annotated hrp promoter sequences. (B). Motif logo for all hrp promoters including the newly identified set. The –35 region is highly conserved but two cytosines in the –10 region show variability. (C). Alignment of individual motifs sequences. Motif ID is the central position (genome coordinate) for the associated ChIP-Seq zone of enrichment. Genes downstream of hrp promoters are identified by PSPTO numbers. (*): Candidate hrp promoter is oriented in an antisense direction relative to PSPTO_4750. PSPTO_3948–9: candidate hrp promoter is between PSPTO_3948 and PSPTO_3949, which are oriented covergently. Motif logos were created by Weblogo [75]. Sequences were aligned and visualized using SeaView [76].