Table 1. Assembly results of sugarcane transcriptome using trinity software.
Length range | Unigene | Merge_Unigene |
200 bp–300 bp | 28,473 (30.85%) | 27,684 (27.73%) |
300 bp–500 bp | 24,852 (26.93%) | 24,795 (24.84%) |
500 bp–1,000 bp | 18,488 (20.03%) | 25,254 (25.30%) |
1,000 bp–2,000 bp | 12,792 (13.86%) | 14,383 (14.41%) |
2,000+bp | 7,692 (8.33%) | 7,708 (7.72%) |
Total number | 92,297 | 99,824 |
Total length | 70,251,430 bp | 77,293,229 bp |
N50 length | 1,300 bp | 1,143 bp |
Mean length | 761.1453 bp | 774.2950 bp |
Notes: N50 length is an indicator of measuring assembly effect, which is calculated by the accumulated length of the assembled fragments from long to short. When the sum is greater than or equal to 50% of the total length, the final accumulated fragment length is the N50 value. Mean length = for the average assembly length.