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. 2014 Aug 29;9(8):e106459. doi: 10.1371/journal.pone.0106459

Figure 1. The summary of analyses.

Figure 1

A. The summary of strict consensus of 24\160 (80\195 terms) most parsimonious topologies recovered from a MP analysis (PAUP*) of conventional Iris s.l. & outgroups plastid supermatrix. Bold branches show the positions of Lophiris nom. provis. (Iris subg. Lophiris) and Zhaoanthus nom. provis. (I. subsect. Chinensis) within the 80-term topology. See Figure S1 and Figure S2A for the details. B. The summary of the single most parsimonious topology recovered from a MP analysis (PAUP*) of WS representation of conventional Iris s.l. & outgroups plastid supermatrix (81 terms, 80 taxa (79 of Iris s.l. +1 outgroup) + operational outgroup). See Figure S3 for the details. C. Summary of the two most probable topologies (80\195 terms) recovered from a ML analysis (RAxML) of conventional Iris s.l. & outgroups plastid supermatrix. ML BS values for nodes receiving >80% supports are indicated above and below the branches. Bold branches show the position of Zhaoanthus nom. provis. (I. subsect. Chinensis) within 80-term topology. See Figure 2A and Figure S2B for the details. D. Consensus topology recovered from a Bayesian analysis (MrBayes) of conventional Iris s.l. & outgroups plastid supermatrix (195 terms). Numbers above and below branches indicate posterior probabilities >0.95. See Figure S4 for the details. Taxa, proposed to be accepted at the generic rank for the first time are indicated in red; taxa potentially recognizable at generic rank are indicated in blue, critical taxa are indicated in green. Selected synonyms of accepted or proposed genera are indicated in curved brackets. Asterisks indicate the branches with a minor conflict of support levels. The widely used name “Limniris (Tausch) Rchb.” must be conserved against “Biris Medik.” (Iris sibirica L.), as it was already conserved against “Pseudo-iris Medik.” [42].