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. 2014 Aug 29;9(8):e106459. doi: 10.1371/journal.pone.0106459

Figure 2. Conventional plastid phylogeny and nested most parsimonious hierarchy of patterns.

Figure 2

A. Most probable topology (-ln likelihood = 45410.319704) recovered from a ML analysis (RAxML) of conventional Iris s.l. & outgroups plastid supermatrix (195 terms). ML BS values for nodes receiving >80% supports are indicated above and below the branches. B. Robinson-Foulds 3TA topology (RFS) of score 7 combined the results of all 3TA analyses (Figure S3 (single MP topology), Figure S5A (single MP topology), and Figures S5B–E (RF median consensus of the even numbers of MP topologies)). See Figure S3 and Figure S5 for the details. Taxa proposed to be accepted at the generic rank for the first time are indicated in red; taxa potentially recognizable at generic rank are indicated in blue, critical taxa are indicated in green. Selected synonyms of accepted or proposed genera are indicated in curved brackets.