Table 2.
Number of ordered and oriented scaffolds assigned to each collared flycatcher chromosome in the ficalb1.5 assembly version. Also shown is assembly size of homologous chromosomes of flycatcher, zebra finch and chicken
| Collared flycatcher | |||||||
|---|---|---|---|---|---|---|---|
| Chromosome | Scaffolds | Super-scaffolds | Singleton scaffolds* | Not oriented scaffolds | Size (Mb) | Zebra finch (Mb) | Chicken (Mb) |
| 1 | 43 | 6 | 3 | 1 | 119.8 | 119.6† | 201.0 |
| 1A | 38 | 8 | 6 | 2 | 74.8 | 73.7 | — |
| 2 | 35 | 8 | 3 | 1 | 157.4 | 156.4 | 154.9 |
| 3 | 28 | 6 | 5 | 1 | 115.7 | 112.6 | 113.7 |
| 4 | 26 | 4 | 4 | 1 | 70.3 | 69.8 | 94.2 |
| 4A | 5 | 2 | 1 | 1 | 21.2 | 20.7 | — |
| 5 | 22 | 5 | 5 | 0 | 64.6 | 62.4 | 62.2 |
| 6 | 11 | 2 | 1 | 0 | 37.2 | 36.3 | 37.4 |
| 7 | 14 | 3 | 0 | 0 | 39.3 | 39.8 | 38.4 |
| 8 | 12 | 3 | 0 | 0 | 32.0 | 28.0 | 30.7 |
| 9 | 7 | 3 | 0 | 0 | 26.8 | 27.2 | 25.6 |
| 10 | 11 | 2 | 0 | 21.3 | 20.8 | 22.6 | |
| 11 | 5 | 2 | 1 | 0 | 21.7 | 21.4 | 21.9 |
| 12 | 11 | 2 | 1 | 0 | 21.9 | 21.6 | 20.5 |
| 13 | 6 | 2 | 2 | 0 | 18.6 | 17.0 | 18.9 |
| 14 | 2 | 1 | 0 | 0 | 17.4 | 16.4 | 15.8 |
| 15 | 1 | 0 | 1 | 0 | 14.9 | 14.4 | 13.0 |
| 16 | 0 | 0 | 0 | 0 | — | <0.01 | 0.43 |
| 17 | 4 | 2 | 0 | 0 | 12.4 | 11.6 | 11.2 |
| 18 | 13 | 1 | 1 | 1 | 13.1 | 11.2 | 10.9 |
| 19 | 6 | 2 | 0 | 0 | 11.9 | 11.6 | 9.9 |
| 20 | 8 | 2 | 1 | 0 | 15.6 | 15.7 | 14.0 |
| 21 | 5 | 1 | 2 | 1 | 8.1 | 6.0 | 7.0 |
| 22 | 8 | 3 | 1 | 3 | 5.7 | 3.4 | 3.9 |
| 23 | 5 | 1 | 0 | 0 | 7.9 | 6.2 | 6.0 |
| 24 | 4 | 1 | 0 | 0 | 8.0 | 8.0 | 6.4 |
| 25 | 19 | 3 | 2 | 1 | 2.7 | 1.3 | 2.0 |
| 26 | 6 | 1 | 2 | 1 | 7.6 | 4.9 | 5.1 |
| 27 | 19 | 4 | 2 | 7 | 5.5 | 4.6 | 4.8 |
| 28 | 12 | 3 | 0 | 3 | 6.1 | 5.0 | 4.5 |
| LGE22‡ | 10 | 3 | 3 | 4 | 2.1 | 0.9 | 0.9 |
| Fal34 | 4 | 1 | 1 | 4 | 0.11§ | — | — |
| Fal35 | 0 | 0 | 0 | 7 | 0¶ | — | — |
| Fal36 | 1 | 0 | 1 | 3 | 0.18** | ||
| Z | 32 | 8 | 5 | 7 | 59.7 | 74.6 | 72.9 |
| Total | 1042 | 1023 | 1031 | ||||
*
Scaffolds which could not be joined to other scaffolds in the super-scaffolding process.
†
1.1 Mb from the tentative chromosome 1B in zebra finch has been added to 1A of this species.
‡
In the most recent chicken genome assembly (Galgal4), the full name of this linkage group is LGE22C19W28_E50C23.
§
Fal34 has an assembly size of 0.29 Mb when including un-oriented scaffolds.
¶
Fal35 has an assembly size of 0.32 Mb when including un-oriented scaffolds.
**
Fal36 has an assembly size of 0.46 Mb when including un-oriented scaffolds.