Table 3.
Summary assembly statistics for the second-generation assembly version of the collared flycatcher genome (ficalb1.5; present study) and the previous ficalb_1.4 version (Ellegren et al. 2012)
| ficalb_1.4 | ficalb1.5 | |||
|---|---|---|---|---|
| # Scaffolds | Size (Mb) | # Scaffolds | Size (Mb) | |
| Ordered and oriented | 67 | 596 | 441 | 1042 |
| Ordered | 67 | 224 | 46 | 15 |
| Inferred | 164 | 182 | 2 | 0 |
| Unassigned | 21 467 (109) | 114 (73) | 21 354 (73) | 59 (23) |
| Total | 21 765 (404) | 1116 (1076) | 21 843 (451) | 1116 (1075) |
All data from scaffolds >200 bp are included, which explains the large number of unassigned scaffolds and the large total number of scaffolds. Data for scaffolds >100 kb are shown in parentheses; note that excluding scaffolds <100 kb has little influence on total assembly size. ‘Inferred’ means scaffolds indirectly assigned to chromosomes based on conserved synteny with zebra finch.