Table 1.
Strains included in this study.
| Species | Strains1 | Origin | Previous identification | GenBank accession no.2 |
|||
|---|---|---|---|---|---|---|---|
| 28S rDNA | ITS | ACT1 | CHS1 | ||||
| Acarospora smaragdula | – | Unknown, Sweden | Acarospora smaragdula | AY853354 | – | – | – |
| Ajellomyces dermatitidis | ATCC 18187 T | Human, unknown | Ajellomyces dermatitidis | AY176704 | – | – | – |
| Amauroascus albicans | NRRL 5141 T | Soil, Honduras | Amauroascus albicans | – | – | – | – |
| Apinisia graminicola | CBS 156.77 | Skin lesion in dog, USA | Apinisia graminicola | AB040696 | – | – | – |
| CBS 721.68 T | Grass, United Kingdom | AY176709 | – | – | – | ||
| Aquaphila albicans | BCC 3520 | On wooden test block (Acacia oblonga), Thailand | Aquaphila albicans | DQ341102 | – | – | – |
| BCC 3543 | On wooden test block (Dipterocarpus alatus), Thailand | DQ341101 | – | – | – | ||
| Arachnomyces minimus | CBS 324.70 T | Decayed wood, Canada | Arachnomyces minimus | FJ358274 | – | – | – |
| Arachnotheca glomerata | CBS 348.71 T | Unknown, Central African Republic | Arachnotheca glomerata | AB075352 | – | – | – |
| Arthroderma cajetanum | UAMH 2937 | Single ascospore isolate from a gymnothecium on soil, unknown | Arthroderma cajetanum | AB075326 | – | – | – |
| Arthroderma ciferrii | CBS 272.66 T | Soil, USA | Arthroderma ciferrii | AB040681 | – | – | – |
| Arthrographis alba | CBS 370.92 T | Marine sediments, Spain | Arthrographis alba | HG004546 | AB213434 | – | – |
| Arthrographis arxii | CBS 203.78 T | Dung of herbivore, India | Eremomyces langeronii | AB213426 | GQ272638 | HG316563 | HG316582 |
| Arthrographis chlamydospora | UTHSC 06-1053 T | Urine, USA | Arthrographis sp. III | HG004543 | HG004554 | HG316560 | HG316580 |
| Arthrographis curvata | FMR 4032 | Marine sediments, Spain | Arthrographis sp. I | HG004539 | HG004557 | HG316557 | HG316577 |
| UTHSC 11-1163 T | Nails, USA | Arthrographis sp. I | HG004542 | HG004556 | HG316558 | HG316578 | |
| Arthrographis globosa | UTHSC 11-757 T | Bronchial wash, USA | Arthrographis sp. IV | HG004541 | HG004553 | HG316561 | HG316581 |
| Arthrographis kalrae | CBS 693.77 T | Sputum, India | Arthrographis kalrae | AB116544 | AB116536 | HG316544 | HG316564 |
| UTHSC 01-2742 | Artificial pulmonary valve, USA | – | HG004570 | – | – | ||
| UTHSC 04-2580 | Blood, USA | – | HG004569 | HG316545 | HG316565 | ||
| UTHSC 04-3423 | Toe nail, USA | – | HG004568 | HG316546 | HG316566 | ||
| UTHSC 05-17 | Blood, USA | – | HG004567 | HG316547 | HG316567 | ||
| UTHSC 06-982 | Pleural fluid, USA | – | HG004571 | – | – | ||
| UTHSC 06-3158 | Toe nail, USA | – | HG004572 | – | – | ||
| UTHSC 07-2450 | Eye, USA | – | HG004566 | HG316548 | HG316568 | ||
| UTHSC 08-527 | Lung tissue, USA | – | HG004573 | – | – | ||
| UTHSC 08-786 | Lung biopsy, USA | – | HG004565 | HG316549 | HG316569 | ||
| UTHSC 08-1699 | Bronchial wash, USA | – | HG004574 | – | – | ||
| UTHSC 08-1804 | Nails, USA | – | HG004564 | HG316550 | HG316570 | ||
| UTHSC 08-2107 | Leg, USA | – | – | – | – | ||
| UTHSC 08-3547 | Sputum , USA | – | HG004575 | – | – | ||
| UTHSC 09-141 | Lung biopsy, USA | – | HG004563 | HG316551 | HG316571 | ||
| UTHSC 09-2903 | Bronchial wash, USA | – | HG004576 | – | – | ||
| UTHSC 10-1652 | Cornea, USA | – | HG004562 | HG316552 | HG316572 | ||
| UTHSC 10-1719 | Cornea, USA | – | HG004577 | – | – | ||
| UTHSC 10-2021 | Catheter tip, USA | – | HG004561 | HG316553 | HG316573 | ||
| UTHSC 10-2583 | Urine, USA | – | HG004560 | HG316554 | HG316574 | ||
| UTHSC 10-2729 | Nasal sinus, USA | – | HG004559 | HG316555 | HG316575 | ||
| Arthrographis kalrae | UTHSC 11-1256 | Bronchial wash, USA | – | HG004558 | HG316556 | HG316576 | |
| UTHSC 11-302 | Eye, USA | – | – | – | – | ||
| Arthrographis lignicola | CBS 689.83 T | Gymnosperm wood chips and bark, Canada | Arthrographis lignicola | HG004547 | – | – | – |
| Arthrographis longispora | UTHSC 05-3220 T | Foot, USA | Arthrographis sp. II | HG004540 | HG004555 | HG316559 | HG316579 |
| Arthrographis pinicola | CBS 653.89 T | Gallery of Ips latidens in Pinus contorta, Canada | Arthrographis pinicola | HG004548 | – | – | – |
| Arthropsis cirrhata | CBS 628.83 T | Wall, The Netherlands | Arthropsis cirrhata | HG004549 | – | – | – |
| Arthropsis hispanica | CBS 351.92 T | Bottom of water deposit, Spain | Arthropsis hispanica | HE965759 | – | – | – |
| UTHSC 09-3174 | Bronchial wash, USA | HE965757 | – | – | – | ||
| Arthropsis microsperma | UAMH 4290 | Grass, England | Arthropsis microsperma | HG004551 | – | – | – |
| Arthropsis truncata | CBS 584.82 T | Leaf litter, Perú | Arthropsis truncata | HG004550 | – | – | – |
| Chalara longipes | NBRC 100564 | Decaying fir needles, Japan | Chalara longipes | – | – | – | – |
| Chlamydotubeufia huaikangplaensis | – | – | Chlamydotubeufia huaikangplaensis | JN865198 | – | – | – |
| Coniochaeta velutina | UAMH 10912 | Ex gametophytes of Hylcomium splendens, Canada | Coniochaeta velutina | EU999180 | – | – | – |
| Ctenomyces serratus | CBS 187.61 T | Soil, Australia | Ctenomyces serratus | AB040683 | – | – | – |
| Eremascus albus | CBS 975.69 | Unknown, USA | Eremascus albus | FJ358283 | – | – | – |
| Eremomyces bilateralis | CBS 781.70 T | Dung of pack rat, USA | Eremomyces bilateralis | HG004545 | – | HG316562 | – |
| Eurotium herbariorum | CBS 516.65 | Unpainted board, USA | Eurotium herbariorum | JF922029 | – | – | – |
| Faurelina indica | CBS 126.78 | Dung of cow, India | Faurelina indica | GU180654 | – | – | – |
| CBS 301.78 | Dung of goat, India | GU180653 | – | – | – | ||
| Geomyces pannorum | UAMH 10473 | Ex biofilm on soil, United Kingdom | Geomyces pannorum | GU951697 | – | – | – |
| Gymnascella aurantiaca | CBS 655.71 T | Clay soil, USA | Gymnascella aurantiaca | AB040684 | – | – | – |
| Gymnascella hyalinospora | CBS 548.72 T | Dung of Guinea pig, India | Gymnascella hyalinospora | AB040687 | – | – | |
| Gymnoascoideus petalosporus | UAMH 3593 | Tinea pedis, human, USA | Gymnoascoideus petalosporus | AB359428 | – | – | |
| Gymnoascus reesii | CBS 410.72 T | Soil, USA | Gymnoascus reesii | JF922021 | – | – | – |
| Helicomyces macrofilamentosus | HKUCC 10235 | – | Helicomyces macrofilamentosus | AY849942 | – | – | – |
| Hyalodendriella betulae | CBS 261.82 | Alnus glutinosa, The Netherlands | Hyalodendriella betulae | EU040232 | – | – | – |
| Hysterographium fraxini | CBS 109.43 | Unknown, Switzerland | Hysterographium fraxini | FJ161171 | – | – | – |
| CBS 242.34 | Unknown, Canada | FJ161189 | – | – | – | ||
| Lambertella brunneola | NBRC 6894 | Aucuba japonica, Japan | Lambertella brunneola | – | – | – | – |
| Leucothecium emdenii | CBS 576.73 T | Agricultural soil, The Netherlands | Leucothecium emdenii | FJ358286 | – | – | – |
| Malbranchea aurantiaca | CBS 127.77 T | Culture contaminant, USA | Malbranchea aurantiaca | AB040704 | – | – | – |
| Malbranchea cinnamomea | CBS 960.72 | Unknown, France | Malbranchea cinnamomea | JF922020 | – | – | – |
| Mallochia reticulata | CBS 392.61 T | Rhizosphere of Musa sapientum, Honduras | Mallochia reticulata | AB075320 | – | – | – |
| Monascus lunisporas | CBS 113675 | Soil, Brazil | Monascus lunisporas | JF922026 | – | – | – |
| Monascus ruber | FRR 2447 T | Soil, India | Monascus ruber | JF922025 | – | – | – |
| Onygena corvina | JCM 9546 | Decaying bone, Japan | Onygena corvina | AB075355 | – | – | – |
| Onygena equina | CBS 947.70 | Cow hoof, Germany | Onygena equina | AB075356 | – | – | – |
| Ostreichnion curtisii | CBS 198.34 | On Quercus sp., USA | Ostreichnion curtisii | FJ161176 | – | – | – |
| Polytolypa hystricis | UAMH 7299 | Ex porcupine dung, Canada | Polytolypa hystricis | AY176718 | – | – | – |
| Porosphaerella borinquensis | ICMP 15117 | Wood, New Zealand | Porosphaerella borinquensis | EF063573 | – | – | – |
| Pseudoarachniotus trochleosporus | CBS 591.71 | Soil, USA | Pseudoarachniotus trochleosporus | AB075344 | – | – | – |
| Pycnora xanthococca | – | Unknown, Sweden | Pycnora xanthococca | AY853388 | – | – | – |
| Rhexothecium globosum | CBS 955.73 T | Desert soil, Egypt | Rhexothecium globosum | HG004544 | – | – | – |
| Rutstroemia cuniculi | NBRC 9671 | Dung of rabbit, England | Rutstroemia cuniculi | – | – | – | – |
| Rutstroemia paludosa | NBRC 9672 | On Symplocarpus foetidus, USA | Rutstroemia paludosa | – | – | – | – |
| Sarcoleotia globosa | – | – | Sarcoleotia globosa | AY789409 | – | – | – |
| Sarea resinae | – | – | Sarea resinae | AY640965 | – | – | – |
| Scleromitrula shiraiana | NBRC 30255 | On Morus bombycis, unknown | Scleromitrula shiraiana | – | – | – | – |
| Scytalidium cuboideum | UAMH 7144 | Ex lingula specimen, USA | Scytalidium cuboideum | AB213427 | – | – | – |
| UAMH 8435 | Bronchial washing, USA | AB213428 | – | – | – | ||
| Shanorella spirotricha | CBS 304.56 | Dung of rabbit, USA | Shanorella spirotricha | FJ358288 | – | – | – |
| Stromatinia gladioli | NBRC 7169 | – | Stromatinia gladioli | – | – | – | – |
| Trichophyton ajelloi var. ajelloi | – | – | Trichophyton ajelloi var. ajelloi | AB075329 | – | – | – |
1 ATCC: American Type Culture Collection, Manassas, VA, USA; BCC: Biotec Culture Collection, National Center for Genetic Engineering and Biotechnology (BIOTEC), Bangkok, Thailand; CBS: CBS-KNAW Fungal Biodiversity Centre, Utrecht, The Netherlands; FFR: culture collection of CSIRO, Australia; FMR: Faculty of Medicine Reus, Spain; HKUCC, Hong Kong University Culture Collection, Department of Ecology and Biodiversity, Hong Kong, China; ICMP: International Collection of Microorganisms, Landcare Research, Auckland, New Zealand; JCM: Japanese collection of microorganism; NBRC: NITE Biological Resource Center, Japan; UAMH: University of Alberta Microfungus Collection and Herbarium; Edmonton, Canada; UTHSC: Fungus Testing Laboratory, University of Texas Health Science Center, San Antonio, TX, USA; T = Ex-type strain.
2 Accession numbers of sequences newly determined in this study are indicated in bold. ITS: internal transcribed spacer regions of the nrDNA and intervening 5.8S nrDNA; ACT1: partial actin gene; CHS1: chitin synthase gene.