Table 1.
Isolates used and genes sequenced in this study.
| Species | Isolate no.1 | Host | Origin | Collector/contributor | GenBank accession no. |
||||
|---|---|---|---|---|---|---|---|---|---|
| ITS | EF 1-α | TUB | ACT | CAL | |||||
| D. alleghaniensis | CBS 495.72* | Betula alleghaniensis | Canada: Ontario | R. Arnold | FJ889444 | GQ250298 | KC843228 | JQ807299 | KC343249 |
| D. australafricana | CBS 113487* | Vitis vinifera | South Africa | L. Mostert | KC343039 | KC843099 | JX275457 | KC843265 | JX197448 |
| CBS 111886 | Vitis vinifera | Australia | R.W.A. Schepers | KC343038 | KC343764 | KC344006 | – | KC343280 | |
| AR5209 = CBS 135771 | Persea americana | USA: California | Akif Eskalen | KF199875 | KF199877 | KF199879 | KF199883 | KF199881 | |
| AR5210 = CBS 135772 | Persea americana | USA: California | Akif Eskalen | KF199876 | KF199878 | KF199880 | KF199884 | KF199882 | |
| D. canthii | CBS 132533* | Canthium inerme | South Africa | P.W. Crous | JX069864 | KC843120 | KC843230 | KC843291 | KC843174 |
| D. citri | AR3405* = CBS 135422 | Citrus sp. | USA: Florida | L.W. Timmer | KC843311 | KC843071 | KC843187 | KC843234 | KC843157 |
| AR3404 | Citrus sp. | USA: Florida | L.W. Timmer | KC843316 | KC843076 | KC843192 | KC843239 | KC843162 | |
| AR3406 | Citrus sp. | USA: Florida | L.W. Timmer | KC843320 | KC843080 | KC843196 | KC843243 | KC843166 | |
| AR4469 = CBS 135423 | Citrus sp. | USA: Florida | L.W. Timmer | KC843321 | KC843081 | KC843197 | KC843244 | KC843167 | |
| AR4470 | Citrus sp. | USA: Florida | L.W. Timmer | KC843318 | KC843078 | KC843194 | KC843241 | KC843164 | |
| AR4471 | Citrus sp. | USA: Florida | L.W. Timmer | KC843317 | KC843077 | KC843193 | KC843240 | KC843163 | |
| FAU583 = CBS 135424 | Citrus paradisi | USA: Florida | F.A. Uecker | KC843327 | KC843087 | KC843203 | KC843250 | KC843173 | |
| AR3403 | Citrus sp. | USA: Florida | L.W. Timmer | KC843310 | KC843070 | KC843186 | KC843233 | KC843156 | |
| AR4473 | Citrus sp. | USA: Florida | L.W. Timmer | KC843319 | KC843079 | KC843195 | KC843242 | KC843165 | |
| AR3407 | Citrus sp. | USA: Florida | L.W. Timmer | KC843313 | KC843073 | KC843189 | KC843236 | KC843159 | |
| AR4472 | Citrus sp. | USA: Florida | L.W. Timmer | KC843312 | KC843072 | KC843188 | KC843235 | KC843158 | |
| AR4364 = CBS 135425 | Citrus unshiu cv. juwadeun | Korea: Odeung-dong | S.K. Hong | KC843326 | KC843086 | KC843202 | KC843249 | KC843172 | |
| AR4370 = CBS 135426 | Citrus unshiu cv. juwadeun | Korea: Odeung-dong | S.K. Hong | KC843324 | KC843084 | KC843200 | KC843247 | KC843170 | |
| AR4350 | Citrus unshiu cv. juwadeun | Korea: Odeung-dong | S.K. Hong | KC843325 | KC843085 | KC843201 | KC843248 | KC843171 | |
| CBS 135767 | Citrus reticulata | China | D. Udayanga | KC843322 | KC843082 | KC843198 | KC843245 | KC843168 | |
| DA103 = CBS 135427 | Citrus reticulata | China | D. Udayanga | KC843323 | KC843083 | KC843199 | KC843246 | KC843169 | |
| ICMP 10355 | Citrus reticulata | New Zealand: Kerikeri | G.J. Samuels | KC843314 | KC843074 | KC843190 | KC843237 | KC843160 | |
| ICMP 6981 | Citrus sp. | USA: Texas | G.J. Samuels | KC843315 | KC843075 | KC843191 | KC843238 | KC843161 | |
| D. cotoneastri | CBS 439.82* | Cotoneaster sp. | UK: Scotland | H. Butin | FJ889450 | GQ250341 | JX275437 | KC843231 | JX197429 |
| DP0667 = CBS 135428 | Juglans cinerea | USA: North Carolina | S. Anagnostakis | KC843328 | KC843121 | KC843229 | KC843232 | KC843155 | |
| D. cynaroidis | CBS 122676* | Protea cynaroidis | South Africa | P.W. Crous | EU552122 | EU552093 | KC344026 | – | KC343300 |
| D. cytosporella | FAU461 = CBS 137020 | Citrus limon | Spain | M. Palm | KC843307 | KC843116 | KC843221 | KC843285 | KC843141 |
| AR5148 | Citrus sinensis | USA: California | A. Eskalen | KC843308 | KC843117 | KC843222 | KC843286 | KC843142 | |
| AR5149* | Citrus sinensis | USA: California | A. Eskalen | KC843309 | KC843118 | KC843222 | KC843287 | KC843143 | |
| D. foeniculina | FAU460 | Citrus limon | Spain | M. Palm | KC843304 | KC843113 | KC843218 | KC843282 | KC843138 |
| MEP1289-1 | Citrus limon | Spain | D. Grenier | KC843305 | KC843114 | KC843219 | KC843283 | KC843139 | |
| FAU462 = CBS 135429 | Citrus limon | Spain | M. Palm | KC843292 | KC843101 | KC843206 | KC843270 | KC843126 | |
| ICMP 6986 | Citrus limon | New Zealand: Hope | – | KC145897 | KC145989 | – | – | – | |
| ICMP 6970 | Acacia sp. | New Zealand: Auckland | G.J. Samuels | KC145896 | KC145984 | – | – | – | |
| ICMP 12285 | Juglans regia | New Zealand | K. Knight | KC145853 | KC145937 | – | – | – | |
| ICMP 6987 | Malus domestica | New Zealand: Nelson | G.J. Samuels | KC145894 | KC145990 | – | – | – | |
| ICMP 17058 | Paraserianthes lophantha | New Zealand: Auckland | C.F. Hill | KC145842 | KC145977 | – | – | – | |
| ICMP 11892 | Fuchsia excorticata | New Zealand: Taupo | J.M. Young | KC145898 | KC145931 | – | – | – | |
| DP0454 | Ribes nigrum | New Zealand: Nelson | C.F. Hill | KC843297 | KC843106 | KC843211 | KC843275 | KC843131 | |
| AR3607 = STE-U2654 | Vitis vinifera | South Africa | L. Mostert | AF230743 | JQ807419 | KC843204 | JQ807344 | KC843123 | |
| DP0392 = CBS 111554 | Foeniculum vulgare | Portugal: Marcos | A.J.L. Phillips | KC843296 | KC843105 | KC843210 | KC843274 | KC843130 | |
| DP0391 = CBS 111553* | Foeniculum vulgare | Portugal: Marcos | A.J.L. Phillips | KC843295 | KC843104 | KC843209 | KC843273 | KC843129 | |
| AR5151 | Citrus latifolia | USA: California | A. Eskalen | KC843303 | KC843112 | KC843217 | KC843281 | KC843137 | |
| D. foeniculina (cont.) | AR5142 = CBS 135430 | Citrus limon | USA: California | A. Eskalen | KC843301 | KC843110 | KC843215 | KC843279 | KC843135 |
| AR5145 | Citrus limon | USA: California | A. Eskalen | KC843306 | KC843115 | KC843220 | KC843284 | KC843140 | |
| AR5147 | Citrus limon | USA: California | A. Eskalen | KC843299 | KC843108 | KC843213 | KC843277 | KC843133 | |
| AR5144 | Citrus limon | USA: California | A. Eskalen | KC843302 | KC843111 | KC843216 | KC843280 | KC843136 | |
| AR5143 | Citrus limon | USA: California | A. Eskalen | KC843294 | KC843103 | KC843208 | KC843294 | KC843128 | |
| AR5146 | Citrus limon | USA: California | A. Eskalen | KC843298 | KC843107 | KC843212 | KC843298 | KC843132 | |
| AR5150 = CBS 135431 | Citrus latifolia | USA: California | A. Eskalen | KC843293 | KC843102 | KC843207 | KC843293 | KC843127 | |
| AR5152 | Citrus latifolia | USA: California | A. Eskalen | KC843300 | KC843109 | KC843214 | KC843300 | KC843134 | |
| D. foeniculina (syn. P. theicola) | CBS 187.27* | Camellia sinesis | Italy | M. Curzi | DQ286287 | DQ286261 | JX275463 | JQ807298 | KC843122 |
| D. foeniculina (syn. D. neotheicola) | CBS 123208* | Foeniculum valgare | Portugal | A.J.L. Phillips | EU814480 | GQ250315 | JX275464 | KC843269 | KC843125 |
| D. foeniculina (syn. D. rhusicola) | CBS 129528* | Rhus pendulina | South Africa | P.W. Crous | JF951146 | KC843100 | KC843205 | KC843268 | KC843124 |
| D. helianthi | CBS 592.81 | Helianthus annuus | Serbia | M Muntanola-Cvetkovic | AY705842 | GQ250308 | JX275465 | KF199885 | JX197454 |
| D. pterocarpi | MFLUCC10-588 | Magnolia sp. | Thailand: Chiang Rai | D. Udayanga | JQ619900 | JX275417 | JX275461 | KC843289 | JX197452 |
| MFLUCC10-575 = CBS 137021 | Pterocarpus indicus | Thailand: Chiang Rai | N.F. Wulandari | JQ619901 | JX275418 | JX275462 | KC843288 | JX197453 | |
| MFLUCC10-571* = CBS 135768 | Pterocarpus indicus | Thailand: Chiang Rai | D. Udayanga | JQ619899 | JX275416 | JX275460 | KC843290 | JX197451 | |
| D. pterocarpicola | MFLUCC10-580a* = CBS 135432 | Pterocarpus indicus | Thailand: Chiang Rai | D. Udayanga | JQ619887 | JX275403 | JX275441 | KF214779 | JX197433 |
| MFLUCC10-580b | Pterocarpus indicus | Thailand: Chiang Rai | N.F. Wulandari | JQ619889 | JX275405 | JX275443 | KF214780 | JX197435 | |
| D. rudis | AR3654 = CBS 135433 | Rosa canina | Austria | W. Jaklitsch | KC843338 | KC843097 | KC843184 | KC843262 | KC843153 |
| DP0423 | Pyrus sp. | New Zealand | W. Kandula | KC843335 | KC843094 | KC843181 | KC843258 | KC843150 | |
| DP0350 = CBS 135434 | Castanea sp. | New Zealand: Churchill | H. Smith | KC843338 | KC843098 | KC843185 | KC843264 | KC843154 | |
| ICMP 12522 | Ileostylis micranthus | New Zealand: Central Otago | P.R. Johnston | KC145906 | KC145940 | – | – | – | |
| ICMP 15267 | Alnus sp. | New Zealand: Mid Canterbury | K. Eade | KC145839 | KC145998 | – | – | – | |
| ICMP 16419 | Castanea sativa | New Zealand: Mid Canterbury | H.C. Smith | KC145904 | KC145976 | – | – | – | |
| ICMP 7025 | Vaccinium corymbosum | New Zealand: Waikato | P.R. Johnston | KC145885 | KC145995 | – | – | – | |
| AR3422 = CBS 109292* | Laburnum anagyroides | Austria | W. Jaklitsch | KC843331 | KC843090 | KC843177 | KC843254 | KC843146 | |
| AR3646 | Epilobium angustifolium | Canada: British Columbia | M. Barr | KC843330 | KC843089 | KC843176 | KC843253 | KC843145 | |
| AR3478 = CBS 109768 | Epilobium angustifolium | Canada: British Columbia | M. Barr | KC843329 | KC843088 | KC843175 | KC843252 | KC843144 | |
| DA243 = CBS 135435 | Brugmansia sp. | Germany | R. Schumacher | KC843332 | KC843091 | KC843178 | KC843255 | KC843147 | |
| DA244 | Brugmansia sp. | Germany | R. Schumacher | KC843334 | KC843093 | KC843180 | KC843257 | KC843149 | |
| ER285A = CBS 135437 | Acer opalus | Italy | E. Camporesi | KC843336 | KC843095 | KC843182 | KC843259 | KC843151 | |
| ER286C | Acer opalus | Italy | E. Camporesi | KC843337 | KC843096 | KC843183 | KC843260 | KC843152 | |
| ER286D | Acer opalus | Italy | E. Camporesi | KC843333 | KC843092 | KC843179 | KC843256 | KC843148 | |
| DPG01 | Vitis viniferra | Italy | X.Z. Liu | JQ619896 | JX275412 | JX27545 | KC843261 | JX197446 | |
| DPG02 | Vitis viniferra | Italy | X.Z. Liu | JQ619897 | JX275413 | JX275456 | KC843263 | JX197447 | |
| D. rudis (syn. D. viticola) | CBS 113201* | Vitis vinifera | Portugal | A.J.L. Phillips | AY485750 | GQ250327 | JX275454 | KC843251 | JX197445 |
| D. thunbergii | MFLUCC10-576a* = CBS 135769 | Thunbergia laurifolia | Thailand: Chiang Mai | D.S. Manamgoda | JQ619893 | JX275409 | JX275449 | KF199886 | JX197440 |
| MFLUCC10-576b | Thunbergia laurifolia | Thailand: Chiang Mai | S.C. Karunaratne | JQ619894 | JX275410 | JX275450 | KF199887 | JX197441 | |
| MFLUCC10-576c | Thunbergia laurifolia | Thailand: Chiang Mai | D. Udayanga | JQ619895 | JX275411 | JX275451 | KF199888 | JX197442 | |
| D. vaccinii | CBS 160.32* | Vaccinium macrocarpon | USA: Massachusetts | C. Shear | AF317578 | GQ250326 | JX275436 | JQ807297 | KC343470 |
| (as Oxycoccus macrocarpos) | |||||||||
| FAU446 = CBS 122113 | Vaccinium macrocarpon | USA: Massachusetts | F. Caruso | U11317,U11367 | JQ807398 | KC843224 | JQ807322 | KC849455 | |
| DF5032 = CBS 135436 | Vaccinium corymbosum | USA: North Carolina | D. Farr | AF317570 | JQ807380 | KC843225 | JQ807303 | KC849456 | |
| FAU633 | Vaccinium sp. | USA: Michigan | – | U11360,U11414 | JQ807413 | KC843226 | JQ807338 | KC849457 | |
| FAU468 | Vaccinium macrocarpon | USA: New Jersey | – | U113327,U11377 | JQ807399 | KC843227 | JQ807323 | KC849458 | |
1 AR, DA, DF, DLR, DP, DPG, ER, FAU, MEP: isolates in SMML culture collection, USDA-ARS, Beltsville, MD, USA; CBS: CBS-KNAW Fungal Biodiversity Centre, Utrecht, The Netherlands; ICMP: International Collection of Microorganisms from Plants, Landcare Research, New Zealand; MFLUCC: Mae Fah Luang University Culture Collection; STE-U: University of Stellenbosch culture collection, Stellenbosch, South Africa;
* = ex-type cultures.