Table 2A. Error rates of Tgo-Pol (exo−) and Tgo-Pol Z1 (exo−) determined using pSJ2a or pSJ3a (a plasmid-based fidelity assay employing the lacZα indicator gene).
| Protein | Total number of coloniesb | Number of white (mutant) colonies | Corrected mutation frequencyc | Error rated |
|---|---|---|---|---|
| Tgo-Pol (exo+) | 29 271 | 20 | 5.7 × 10−4 | 2.8 × 10−6 |
| Tgo-Pol (exo−: D215A) | 62 656 | 155 | 2.4 × 10−3 | 1.2 × 10−5 |
| Z1-Tgo-Pol (exo−: D215A) | 64 657 | 266 | 4.0 × 10−3 | 1.9 × 10−5 |
| Pfu-Pol (exo−: E143A/D215A)(D473G)e | 78 431 | 296 | 3.7 × 10−3 | 1.8 × 10−5 |
| Eco-Pol II (exo+) | 59 235 | 28 | 4.4 × 10−4 | 3.0 × 10−6 |
| Eco-Pol II (exo−: D335N) | 41 903 | 128 | 3.0 × 10−3 | 2.1 × 10−5 |
apSJ2 was used with the archaeal enzymes, pSJ3 with E. coli DNA polymerase II.
bThe fidelity of each protein was determined in three separate experiments, each of which involved scoring E. coli colonies on five separate plates. The aggregated numbers are given.
cCorrected mutation frequency equals: ({number of white colonies/total number of colonies} – background mutation rate). Background mutation rates of 1.1 × 10−4 and 3.1 × 10−5 were used for gapped pSJ2 and pSJ3, respectively (36).
dError rate is the number of mistakes made per base incorporated. The corrected mutation frequency was converted to the error rate as previously described.
eData taken from an earlier publication (36).