Table 2.
Flavivirus positive pools
| Flavivirus strain ID | GenBank accession number | Detected virus | Pool size | Collection date | NS5 short PCR | NS5 long PCR | DNA PCR |
|---|---|---|---|---|---|---|---|
| Oc941-AL | KF882512 | MMV | 200 | 4 Aug | + | + | / |
| Oc942-AL | KF882513 | MMV | 186 | 4 Aug/AL | + | + | / |
| USU/m2080-NO | KF882514 | USUV | 3 | 15 Sept/NO | + | + | / |
| Aa564-TO | KF801589 | AeFV | 1 | 1 Aug/TO | + | + | / |
| Av569-VC | KF801590 | ISF (DNA form) | 11 | 1 Aug/VC | + | - | + |
| Oc599-AL | KF801593 | MMV | 200 | 8 Aug/AL | + | + | / |
| Aa607-CN | KF801591 | AeFV | 5 | 8 Aug/CN | + | + | / |
| Aa610-TO | KF801592 | AeFV | 3 | 8 Aug/TO | + | + | / |
| USU/m688-NO | KF801594 | USUV | 200 | 22 Aug/NO | + | + | / |
| USU/m689-NO | KF801595 | USUV | 111 | 22 Aug/NO | + | + | / |
| Oc694-VC | / | ISF (DNA form?) | 158 | 22 Aug/VC | + | - | ND |
| USU/m699-NO | KF801596 | USUV | 203 | 22 Aug/NO | + | + | / |
| Av707-VC | / | ISF (DNA form) | 10 | 22 Aug/VC | + | - | + |
| Og709-VC | / | ISF (DNA form) | 10 | 22 Aug/VC | + | - | + |
| Av710-VC | KF801597 | ISF (DNA form) | 4 | 22 Aug/ | + | - | + |
| Oc748-AL | KF801598 | MMV | 88 | 28 Aug/AL | + | + | / |
| Aa756-CN | KF801599 | AeFV | 2 | 29 Aug/CN | + | + | / |
| USU/m851-NO | KF801600 | USUV | 18 | 5 Sept/NO | + | + | / |
| Av852-NO | / | ISF (DNA form) | 1 | 5 Sept/NO | + | - | + |
| Av1012-VC | / | ISF (DNA form?) | 4 | 19 Sept/VC | + | - | ND |
| Av1014-VC | KF801601 | ISF (DNA form) | 6 | 19 Sept/VC | + | - | + |
| Aa1015-TO | / | ISF (DNA form?) | 4 | 19 Sept/TO | + | - | ND |
| Aa1019-TO | / | AeFV | 7 | 19 Sept/TO | + | ND | / |
| Av1020-TO | KF801602 | ISF (DNA form) | 1 | 19 Sept/TO | + | - | + |
| Aa1028-BI | KF801603 | AeFV | 2 | 19 Sept/BI | + | + | / |
| Av1106-TO | KF801604 | ISF (DNA form) | 3 | 26 Sept/TO | + | - | + |
| Aa1108-AL | KF801605 | AeFV | 2 | 26 Sept/AL | + | + | / |
| Aa1109-TO | KM206278 | AeFV | 6 | 26 Sept/TO | + | + | / |
| Aa1113-CN | / | AeFV | 10 | 26 Sept/CN | + | ND | / |
| Av1116-CN | KF801606 | ISF (DNA form) | 1 | 26 Sept/CN | + | - | + |
| Av1228-VC | KF801607 | ISF (DNA form) | 4 | 3 Oct/VC | + | - | + |
| Av1232-NO | KF801608 | ISF (DNA form) | 1 | 3 Oct/NO | + | - | + |
| Aa1243-TO | KF801609 | AeFV | 4 | 5 Oct/TO | + | + | / |
| Aa1245-BI | KF801610 | AeFV | 4 | 5 Oct/BI | + | + | / |
| Aa1326-AL | KF801611 | AeFV | 5 | 10 Oct/AL | + | + | / |
| Aa1332-AL | KF801612 | AeFV | 2 | 10 Oct/AL | + | + | / |
| Av1337-NO | KF801613 | ISF (DNA form) | 3 | 12 Oct/NO | + | - | + |
The Flavivirus strain ID code refers to mosquito species (Oc: Oc. caspius, Aa: Ae. albopictus, Av: Ae. vexans, Og: Oc. geniculatus, Cp: Cx. pipiens), sample no.- province (TO, Torino; CN, Cuneo; NO, Novara; BI, Biella; VC, Vercelli; AL, Alessandria); for USUV ID: virus/organism (mosquito), sample no.-province. ND: not done for lack of material.